Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.2■□□□□ 0.66
HTTP42858 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HTTP42858 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC19.2■□□□□ 0.66
HTTP42858 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC19.2■□□□□ 0.66
HTTP42858 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HTTP42858 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC19.19■□□□□ 0.66
HTTP42858 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HTTP42858 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 ZNF138-201ENST00000307355 1141 ntAPPRIS ALT2 TSL 4 BASIC19.19■□□□□ 0.66
HTTP42858 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC19.19■□□□□ 0.66
HTTP42858 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 RN7SL837P-201ENST00000463010 287 ntBASIC19.19■□□□□ 0.66
HTTP42858 USB1-203ENST00000539737 1212 ntTSL 2 BASIC19.19■□□□□ 0.66
HTTP42858 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC19.19■□□□□ 0.66
HTTP42858 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC19.19■□□□□ 0.66
HTTP42858 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
HTTP42858 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HTTP42858 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 AC022210.1-201ENST00000449856 793 ntBASIC19.18■□□□□ 0.66
HTTP42858 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HTTP42858 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC19.18■□□□□ 0.66
HTTP42858 APOC4-201ENST00000591600 348 ntTSL 3 BASIC19.18■□□□□ 0.66
HTTP42858 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.18■□□□□ 0.66
HTTP42858 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC19.18■□□□□ 0.66
HTTP42858 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 AC046185.3-201ENST00000623228 1824 ntBASIC19.18■□□□□ 0.66
HTTP42858 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC19.18■□□□□ 0.66
HTTP42858 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC19.18■□□□□ 0.66
HTTP42858 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HTTP42858 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 AC016027.1-202ENST00000607927 1699 ntBASIC19.18■□□□□ 0.66
HTTP42858 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 AL391825.1-201ENST00000457671 1364 ntBASIC19.18■□□□□ 0.66
HTTP42858 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC19.18■□□□□ 0.66
HTTP42858 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
HTTP42858 DLX2-AS1-201ENST00000448117 950 ntTSL 5 BASIC19.18■□□□□ 0.66
HTTP42858 CPQ-201ENST00000220763 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HTTP42858 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 ENSA-206ENST00000361631 725 ntTSL 2 BASIC19.17■□□□□ 0.66
HTTP42858 HIST1H2BPS3-201ENST00000419683 341 ntBASIC19.17■□□□□ 0.66
HTTP42858 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC19.17■□□□□ 0.66
HTTP42858 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC19.17■□□□□ 0.66
HTTP42858 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 AL109936.8-201ENST00000641772 604 ntBASIC19.17■□□□□ 0.66
HTTP42858 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC19.17■□□□□ 0.66
HTTP42858 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.17■□□□□ 0.66
HTTP42858 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC19.17■□□□□ 0.66
HTTP42858 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 RPF1-202ENST00000370656 724 ntTSL 2 BASIC19.17■□□□□ 0.66
HTTP42858 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC19.17■□□□□ 0.66
HTTP42858 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC19.17■□□□□ 0.66
HTTP42858 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC19.17■□□□□ 0.66
HTTP42858 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.17■□□□□ 0.66
HTTP42858 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HTTP42858 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC19.16■□□□□ 0.66
HTTP42858 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.16■□□□□ 0.66
HTTP42858 DFFBP1-201ENST00000433250 979 ntBASIC19.16■□□□□ 0.66
HTTP42858 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC19.16■□□□□ 0.66
HTTP42858 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC19.16■□□□□ 0.66
HTTP42858 AL138918.1-201ENST00000568306 659 ntBASIC19.16■□□□□ 0.66
HTTP42858 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HTTP42858 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HTTP42858 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC19.16■□□□□ 0.66
HTTP42858 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 60.7 ms