Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 HLA-J-201ENST00000462773 1622 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 AL020989.1-201ENST00000422979 469 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 AC073648.2-201ENST00000510116 352 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 STK19B-204ENST00000512515 211 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 AP002469.2-201ENST00000531724 424 ntBASIC16.97■□□□□ 0.31
SHMT2P34897 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC16.97■□□□□ 0.31
SHMT2P34897 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
SHMT2P34897 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC16.97■□□□□ 0.31
SHMT2P34897 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
SHMT2P34897 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 PCDHA5-202ENST00000529859 5218 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 AC018695.7-201ENST00000624587 2492 ntBASIC16.96■□□□□ 0.31
SHMT2P34897 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC16.96■□□□□ 0.31
SHMT2P34897 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC16.96■□□□□ 0.31
SHMT2P34897 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.96■□□□□ 0.31
SHMT2P34897 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
SHMT2P34897 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
SHMT2P34897 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC16.96■□□□□ 0.31
SHMT2P34897 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
SHMT2P34897 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC16.96■□□□□ 0.31
SHMT2P34897 FAM197Y8-203ENST00000450145 560 ntBASIC16.96■□□□□ 0.31
SHMT2P34897 AF186996.4-201ENST00000467186 377 ntBASIC16.96■□□□□ 0.31
SHMT2P34897 TP73-AS1-207ENST00000624167 988 ntBASIC16.96■□□□□ 0.31
SHMT2P34897 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.96■□□□□ 0.31
SHMT2P34897 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
SHMT2P34897 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.96■□□□□ 0.3
SHMT2P34897 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 COQ6-201ENST00000334571 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SHMT2P34897 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC16.96■□□□□ 0.3
SHMT2P34897 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.96■□□□□ 0.3
SHMT2P34897 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
SHMT2P34897 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.96■□□□□ 0.3
SHMT2P34897 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
SHMT2P34897 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 AC133963.1-201ENST00000504166 1679 ntBASIC16.95■□□□□ 0.3
SHMT2P34897 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 AC026396.1-201ENST00000419388 421 ntBASIC16.95■□□□□ 0.3
SHMT2P34897 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 SART3-203ENST00000546611 1184 ntBASIC16.95■□□□□ 0.3
SHMT2P34897 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.95■□□□□ 0.3
SHMT2P34897 NKAPP1-205ENST00000585790 367 ntBASIC16.95■□□□□ 0.3
SHMT2P34897 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 NFIB-212ENST00000622520 1274 ntTSL 5 BASIC16.95■□□□□ 0.3
SHMT2P34897 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC16.95■□□□□ 0.3
SHMT2P34897 AL022326.1-202ENST00000641533 845 ntBASIC16.95■□□□□ 0.3
SHMT2P34897 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
SHMT2P34897 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.95■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 84.1 ms