Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC19.76■□□□□ 0.75
SMARCA1P28370 AL671883.3-201ENST00000603274 991 ntBASIC19.76■□□□□ 0.75
SMARCA1P28370 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC19.76■□□□□ 0.75
SMARCA1P28370 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC19.76■□□□□ 0.75
SMARCA1P28370 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC19.76■□□□□ 0.75
SMARCA1P28370 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC19.75■□□□□ 0.75
SMARCA1P28370 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SMARCA1P28370 PMS2P1-201ENST00000431037 1228 ntBASIC19.75■□□□□ 0.75
SMARCA1P28370 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.75■□□□□ 0.75
SMARCA1P28370 KRT18P58-201ENST00000527480 1120 ntBASIC19.75■□□□□ 0.75
SMARCA1P28370 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.75■□□□□ 0.75
SMARCA1P28370 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.75■□□□□ 0.75
SMARCA1P28370 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
SMARCA1P28370 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 MAP3K6-207ENST00000493901 4309 ntAPPRIS P1 TSL 5 BASIC19.75■□□□□ 0.75
SMARCA1P28370 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.75■□□□□ 0.75
SMARCA1P28370 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 RABGGTA-201ENST00000216840 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC19.74■□□□□ 0.75
SMARCA1P28370 DYNC1LI2-202ENST00000440564 1145 ntTSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC19.74■□□□□ 0.75
SMARCA1P28370 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.74■□□□□ 0.75
SMARCA1P28370 ISLR2-210ENST00000565540 2780 ntAPPRIS P1 TSL 4 BASIC19.74■□□□□ 0.75
SMARCA1P28370 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 LETM1P2-201ENST00000597330 2178 ntBASIC19.74■□□□□ 0.75
SMARCA1P28370 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SMARCA1P28370 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC19.74■□□□□ 0.75
SMARCA1P28370 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC19.74■□□□□ 0.75
SMARCA1P28370 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC19.74■□□□□ 0.75
SMARCA1P28370 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC19.73■□□□□ 0.75
SMARCA1P28370 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SMARCA1P28370 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SMARCA1P28370 AC108860.2-201ENST00000562760 2183 ntBASIC19.73■□□□□ 0.75
SMARCA1P28370 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC19.73■□□□□ 0.75
SMARCA1P28370 FAM185BP-201ENST00000443595 716 ntBASIC19.73■□□□□ 0.75
SMARCA1P28370 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.73■□□□□ 0.75
SMARCA1P28370 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC19.73■□□□□ 0.75
SMARCA1P28370 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC19.73■□□□□ 0.75
SMARCA1P28370 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 ZFP1-208ENST00000568079 1426 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.73■□□□□ 0.75
SMARCA1P28370 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SMARCA1P28370 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SMARCA1P28370 BANP-227ENST00000626016 2144 ntTSL 2 BASIC19.73■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms