Protein–RNA interactions for Protein: P04004

VTN, Vitronectin, humanhuman

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTNP04004 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
VTNP04004 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC18.89■□□□□ 0.62
VTNP04004 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.89■□□□□ 0.61
VTNP04004 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
VTNP04004 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC18.89■□□□□ 0.61
VTNP04004 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
VTNP04004 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC18.89■□□□□ 0.61
VTNP04004 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC18.89■□□□□ 0.61
VTNP04004 FAM185BP-201ENST00000443595 716 ntBASIC18.89■□□□□ 0.61
VTNP04004 SLC26A4-AS1-202ENST00000449741 586 ntTSL 4 BASIC18.89■□□□□ 0.61
VTNP04004 AC074386.1-202ENST00000463561 864 ntBASIC18.89■□□□□ 0.61
VTNP04004 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC18.89■□□□□ 0.61
VTNP04004 AC130456.4-201ENST00000568635 665 ntTSL 2 BASIC18.89■□□□□ 0.61
VTNP04004 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC18.89■□□□□ 0.61
VTNP04004 ACTL9-202ENST00000612068 1252 ntBASIC18.89■□□□□ 0.61
VTNP04004 AC007064.4-201ENST00000637740 555 ntBASIC18.89■□□□□ 0.61
VTNP04004 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 MVB12A-201ENST00000317040 2223 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
VTNP04004 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.89■□□□□ 0.61
VTNP04004 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
VTNP04004 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
VTNP04004 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC18.88■□□□□ 0.61
VTNP04004 AP006288.1-201ENST00000446065 395 ntBASIC18.88■□□□□ 0.61
VTNP04004 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC18.88■□□□□ 0.61
VTNP04004 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC18.88■□□□□ 0.61
VTNP04004 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC18.88■□□□□ 0.61
VTNP04004 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.88■□□□□ 0.61
VTNP04004 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC18.88■□□□□ 0.61
VTNP04004 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 CYP51A1P2-201ENST00000419457 1499 ntBASIC18.88■□□□□ 0.61
VTNP04004 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
VTNP04004 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
VTNP04004 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.87■□□□□ 0.61
VTNP04004 HAPLN4-201ENST00000291481 3449 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 CD40-201ENST00000372276 1623 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
VTNP04004 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.87■□□□□ 0.61
VTNP04004 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC18.87■□□□□ 0.61
VTNP04004 CEND1P1-201ENST00000451006 455 ntBASIC18.87■□□□□ 0.61
VTNP04004 AL513480.1-201ENST00000451731 511 ntBASIC18.87■□□□□ 0.61
VTNP04004 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC18.87■□□□□ 0.61
VTNP04004 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
VTNP04004 GNE-204ENST00000539208 2190 ntTSL 2 BASIC18.87■□□□□ 0.61
VTNP04004 AL031432.2-201ENST00000566714 459 ntBASIC18.87■□□□□ 0.61
VTNP04004 AL928711.1-201ENST00000570165 459 ntBASIC18.87■□□□□ 0.61
VTNP04004 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
VTNP04004 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC18.87■□□□□ 0.61
VTNP04004 AC097376.2-204ENST00000609359 627 ntTSL 2 BASIC18.87■□□□□ 0.61
VTNP04004 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 ELL2P1-201ENST00000413990 1906 ntBASIC18.86■□□□□ 0.61
VTNP04004 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
VTNP04004 GGCT-205ENST00000409436 954 ntTSL 3 BASIC18.86■□□□□ 0.61
VTNP04004 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC18.86■□□□□ 0.61
VTNP04004 FAM58CP-201ENST00000435741 640 ntBASIC18.86■□□□□ 0.61
VTNP04004 MKNK2P1-201ENST00000437526 628 ntBASIC18.86■□□□□ 0.61
VTNP04004 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC18.86■□□□□ 0.61
VTNP04004 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.86■□□□□ 0.61
VTNP04004 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.86■□□□□ 0.61
VTNP04004 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.86■□□□□ 0.61
VTNP04004 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
VTNP04004 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms