Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.93■□□□□ 0.3
SIX3O95343 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
SIX3O95343 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
SIX3O95343 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.93■□□□□ 0.3
SIX3O95343 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 OPRK1-205ENST00000612786 5196 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 PFDN6-206ENST00000463584 1915 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX3O95343 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 AC132938.5-201ENST00000624980 1813 ntBASIC16.92■□□□□ 0.3
SIX3O95343 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 BOLA1-202ENST00000369152 859 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 AL157871.1-202ENST00000556458 478 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
SIX3O95343 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC16.92■□□□□ 0.3
SIX3O95343 AC011467.2-201ENST00000598425 242 ntBASIC16.92■□□□□ 0.3
SIX3O95343 AC116407.4-201ENST00000623319 1061 ntBASIC16.92■□□□□ 0.3
SIX3O95343 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
SIX3O95343 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 ADCY9-201ENST00000294016 7725 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 SHBG-201ENST00000340624 1311 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 KRT18P1-202ENST00000452408 1331 ntBASIC16.92■□□□□ 0.3
SIX3O95343 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.92■□□□□ 0.3
SIX3O95343 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.92■□□□□ 0.3
SIX3O95343 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.92■□□□□ 0.3
SIX3O95343 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX3O95343 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SIX3O95343 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX3O95343 AC233702.3-201ENST00000578656 1387 ntBASIC16.91■□□□□ 0.3
SIX3O95343 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SIX3O95343 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 AC009336.1-201ENST00000608941 1553 ntBASIC16.91■□□□□ 0.3
SIX3O95343 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
SIX3O95343 PPIH-202ENST00000372549 327 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 AP002383.4-201ENST00000442518 975 ntBASIC16.91■□□□□ 0.3
SIX3O95343 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 TSSC2-201ENST00000450217 709 ntBASIC16.91■□□□□ 0.3
SIX3O95343 VENTXP7-201ENST00000475503 772 ntBASIC16.91■□□□□ 0.3
SIX3O95343 AL161669.1-201ENST00000559843 386 ntTSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC16.91■□□□□ 0.3
SIX3O95343 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 ARHGEF25-208ENST00000616622 2103 ntTSL 2 BASIC16.91■□□□□ 0.3
SIX3O95343 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SIX3O95343 TP73-AS1-210ENST00000637775 1455 ntBASIC16.91■□□□□ 0.3
SIX3O95343 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SIX3O95343 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SIX3O95343 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.91■□□□□ 0.3
SIX3O95343 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
SIX3O95343 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
SIX3O95343 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 81.1 ms