Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 LINC00960-201ENST00000463183 1333 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.99■□□□□ 0.31
VPS4BO75351 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 PTEN-201ENST00000371953 9027 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 RPP21-221ENST00000428040 594 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 TOB2P1-201ENST00000469761 992 ntBASIC16.99■□□□□ 0.31
VPS4BO75351 AC002558.1-201ENST00000488906 803 ntBASIC16.99■□□□□ 0.31
VPS4BO75351 BMF-207ENST00000559701 630 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS4BO75351 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 TPSP2-201ENST00000561760 610 ntBASIC16.99■□□□□ 0.31
VPS4BO75351 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS4BO75351 AL121912.1-201ENST00000603683 238 ntBASIC16.99■□□□□ 0.31
VPS4BO75351 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 RHBDF1P1-201ENST00000427504 1941 ntBASIC16.99■□□□□ 0.31
VPS4BO75351 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 KSR1-201ENST00000268763 2806 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
VPS4BO75351 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.99■□□□□ 0.31
VPS4BO75351 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.99■□□□□ 0.31
VPS4BO75351 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
VPS4BO75351 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
VPS4BO75351 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
VPS4BO75351 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.99■□□□□ 0.31
VPS4BO75351 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 RHNO1-209ENST00000618250 2070 ntAPPRIS P3 TSL 4 BASIC16.98■□□□□ 0.31
VPS4BO75351 VARS-215ENST00000375663 4312 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS4BO75351 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.98■□□□□ 0.31
VPS4BO75351 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.98■□□□□ 0.31
VPS4BO75351 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
VPS4BO75351 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
VPS4BO75351 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
VPS4BO75351 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.98■□□□□ 0.31
VPS4BO75351 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 OS9-205ENST00000413095 1660 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4BO75351 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
VPS4BO75351 AC016757.1-205ENST00000470346 1888 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4BO75351 PTPN18-201ENST00000175756 3669 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
VPS4BO75351 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC16.97■□□□□ 0.31
VPS4BO75351 DFFB-203ENST00000341385 572 ntTSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 TEX30-205ENST00000376029 959 ntTSL 2 BASIC16.97■□□□□ 0.31
VPS4BO75351 ISG15-201ENST00000379389 711 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
VPS4BO75351 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
VPS4BO75351 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC16.97■□□□□ 0.31
VPS4BO75351 AL590627.1-203ENST00000421194 1026 ntBASIC16.97■□□□□ 0.31
VPS4BO75351 AC096633.1-201ENST00000422446 749 ntBASIC16.97■□□□□ 0.31
VPS4BO75351 PMS2P1-201ENST00000431037 1228 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms