Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 RDH12-201ENST00000267502 1833 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 NANS-201ENST00000210444 1170 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 PLEKHG6-203ENST00000396988 2963 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC16.29■□□□□ 0.2
LDB3O75112 PRYP5-201ENST00000451909 266 ntBASIC16.29■□□□□ 0.2
LDB3O75112 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC16.29■□□□□ 0.2
LDB3O75112 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 AC073648.2-201ENST00000510116 352 ntBASIC16.29■□□□□ 0.2
LDB3O75112 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 RNF151-202ENST00000569210 853 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC16.29■□□□□ 0.2
LDB3O75112 CALM3-211ENST00000598871 561 ntTSL 4 BASIC16.29■□□□□ 0.2
LDB3O75112 AC104692.2-201ENST00000603054 253 ntBASIC16.29■□□□□ 0.2
LDB3O75112 AC025062.2-201ENST00000605477 670 ntBASIC16.29■□□□□ 0.2
LDB3O75112 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.29■□□□□ 0.2
LDB3O75112 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 FGD5-201ENST00000285046 5720 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 DHX33-202ENST00000433302 2225 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 BMPER-201ENST00000297161 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 SH3BP4-202ENST00000392011 5194 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB3O75112 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
LDB3O75112 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB3O75112 RNPS1P1-201ENST00000507437 918 ntBASIC16.28■□□□□ 0.2
LDB3O75112 MOK-208ENST00000519058 917 ntTSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 MSRA-206ENST00000521209 814 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB3O75112 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC16.28■□□□□ 0.2
LDB3O75112 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC16.28■□□□□ 0.2
LDB3O75112 VPS51-217ENST00000639871 243 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC16.28■□□□□ 0.2
LDB3O75112 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
LDB3O75112 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC16.28■□□□□ 0.2
LDB3O75112 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
LDB3O75112 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
LDB3O75112 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC16.27■□□□□ 0.2
LDB3O75112 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC16.27■□□□□ 0.2
LDB3O75112 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
LDB3O75112 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
LDB3O75112 RAB17-203ENST00000409576 466 ntTSL 3 BASIC16.27■□□□□ 0.2
LDB3O75112 RPS2P1-201ENST00000434010 821 ntBASIC16.27■□□□□ 0.2
LDB3O75112 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.27■□□□□ 0.2
LDB3O75112 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms