Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
CLDN3O15551 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC18.91■□□□□ 0.62
CLDN3O15551 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC18.9■□□□□ 0.62
CLDN3O15551 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 PP12613-201ENST00000424958 2230 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.9■□□□□ 0.62
CLDN3O15551 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC18.9■□□□□ 0.62
CLDN3O15551 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
CLDN3O15551 AL353135.1-201ENST00000606729 504 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 BX640515.1-201ENST00000617215 977 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 MIR1199-201ENST00000621445 119 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC18.9■□□□□ 0.62
CLDN3O15551 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC18.9■□□□□ 0.62
CLDN3O15551 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 AC139713.2-201ENST00000641328 2723 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.9■□□□□ 0.62
CLDN3O15551 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
CLDN3O15551 AP002414.3-201ENST00000589352 1468 ntBASIC18.9■□□□□ 0.62
CLDN3O15551 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CLDN3O15551 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.62
CLDN3O15551 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 GLDN-201ENST00000335449 4971 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 MSANTD3-201ENST00000374885 786 ntTSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN3O15551 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 NFKBIB-202ENST00000392079 991 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN3O15551 AC073621.1-201ENST00000392730 636 ntBASIC18.89■□□□□ 0.61
CLDN3O15551 CENPM-204ENST00000402420 688 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN3O15551 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC18.89■□□□□ 0.61
CLDN3O15551 AL356488.2-201ENST00000602755 427 ntBASIC18.89■□□□□ 0.61
CLDN3O15551 IL9RP2-201ENST00000423948 1312 ntBASIC18.89■□□□□ 0.61
CLDN3O15551 FIP1L1-207ENST00000507922 1335 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CLDN3O15551 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 WTAP-205ENST00000614346 1623 ntTSL 2 BASIC18.89■□□□□ 0.61
CLDN3O15551 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.89■□□□□ 0.61
CLDN3O15551 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CLDN3O15551 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CLDN3O15551 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.88■□□□□ 0.61
CLDN3O15551 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 AL645608.8-201ENST00000606034 2086 ntBASIC18.88■□□□□ 0.61
CLDN3O15551 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 BOC-212ENST00000485230 2173 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN3O15551 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 AC136632.2-201ENST00000512891 861 ntBASIC18.88■□□□□ 0.61
CLDN3O15551 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.88■□□□□ 0.61
CLDN3O15551 RPS29-206ENST00000557111 488 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 ETFA-208ENST00000559602 792 ntTSL 3 BASIC18.88■□□□□ 0.61
CLDN3O15551 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CLDN3O15551 AL512343.2-201ENST00000609423 490 ntTSL 2 BASIC18.88■□□□□ 0.61
CLDN3O15551 AC120114.3-201ENST00000611923 658 ntBASIC18.88■□□□□ 0.61
CLDN3O15551 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC18.88■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms