Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC29.21■■■□□ 2.27
CUX2O14529 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC29.21■■■□□ 2.27
CUX2O14529 MMP17-203ENST00000535004 719 ntTSL 3 BASIC29.21■■■□□ 2.27
CUX2O14529 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC29.21■■■□□ 2.27
CUX2O14529 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC29.21■■■□□ 2.27
CUX2O14529 AC007333.1-201ENST00000568286 630 ntTSL 3 BASIC29.21■■■□□ 2.27
CUX2O14529 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC29.21■■■□□ 2.27
CUX2O14529 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC29.2■■■□□ 2.27
CUX2O14529 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC29.2■■■□□ 2.27
CUX2O14529 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
CUX2O14529 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC29.2■■■□□ 2.27
CUX2O14529 PGAP3-206ENST00000579146 2220 ntTSL 2 BASIC29.2■■■□□ 2.26
CUX2O14529 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX2O14529 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC29.2■■■□□ 2.26
CUX2O14529 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX2O14529 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC29.2■■■□□ 2.26
CUX2O14529 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC29.2■■■□□ 2.26
CUX2O14529 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX2O14529 SLC25A35-205ENST00000580340 1541 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX2O14529 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC29.2■■■□□ 2.26
CUX2O14529 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 BTBD7P1-201ENST00000447253 1453 ntBASIC29.19■■■□□ 2.26
CUX2O14529 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 NSL1-201ENST00000366976 722 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 AL354761.2-202ENST00000430816 546 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
CUX2O14529 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 AC007389.4-201ENST00000454674 793 ntBASIC29.19■■■□□ 2.26
CUX2O14529 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 AC108725.1-201ENST00000495472 409 ntBASIC29.19■■■□□ 2.26
CUX2O14529 NEU3-203ENST00000529024 581 ntTSL 3 BASIC29.19■■■□□ 2.26
CUX2O14529 AGER-214ENST00000538695 487 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC29.19■■■□□ 2.26
CUX2O14529 AGER-215ENST00000620802 737 ntTSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC29.19■■■□□ 2.26
CUX2O14529 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC29.19■■■□□ 2.26
CUX2O14529 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC29.19■■■□□ 2.26
CUX2O14529 SLC7A15P-201ENST00000424028 1363 ntBASIC29.18■■■□□ 2.26
CUX2O14529 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC29.18■■■□□ 2.26
CUX2O14529 SVIL-AS1-208ENST00000446807 1007 ntTSL 3 BASIC29.18■■■□□ 2.26
CUX2O14529 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC29.18■■■□□ 2.26
CUX2O14529 AC135586.1-201ENST00000539323 574 ntBASIC29.18■■■□□ 2.26
CUX2O14529 IGFLR1-211ENST00000592889 782 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC29.18■■■□□ 2.26
CUX2O14529 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC29.18■■■□□ 2.26
CUX2O14529 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC29.18■■■□□ 2.26
CUX2O14529 AC073592.3-201ENST00000625118 1834 ntBASIC29.18■■■□□ 2.26
CUX2O14529 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC29.18■■■□□ 2.26
CUX2O14529 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 ETFBKMT-202ENST00000395763 2055 ntAPPRIS P1 TSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC29.18■■■□□ 2.26
CUX2O14529 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC29.17■■■□□ 2.26
CUX2O14529 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC29.17■■■□□ 2.26
CUX2O14529 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC29.17■■■□□ 2.26
CUX2O14529 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC29.17■■■□□ 2.26
CUX2O14529 CROCCP4-201ENST00000457096 498 ntBASIC29.17■■■□□ 2.26
CUX2O14529 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC29.17■■■□□ 2.26
CUX2O14529 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC29.17■■■□□ 2.26
CUX2O14529 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC29.17■■■□□ 2.26
CUX2O14529 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 HLA-F-218ENST00000376861 1544 ntAPPRIS ALT2 BASIC29.17■■■□□ 2.26
CUX2O14529 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC29.17■■■□□ 2.26
CUX2O14529 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC29.17■■■□□ 2.26
CUX2O14529 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC29.17■■■□□ 2.26
CUX2O14529 CATSPERZ-203ENST00000539943 917 ntAPPRIS ALT2 TSL 2 BASIC29.17■■■□□ 2.26
CUX2O14529 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC29.17■■■□□ 2.26
CUX2O14529 RARRES2P9-201ENST00000565168 469 ntBASIC29.17■■■□□ 2.26
CUX2O14529 WNT11-204ENST00000621122 789 ntTSL 5 BASIC29.17■■■□□ 2.26
CUX2O14529 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CUX2O14529 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC29.16■■■□□ 2.26
CUX2O14529 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC29.16■■■□□ 2.26
CUX2O14529 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC29.16■■■□□ 2.26
CUX2O14529 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC29.16■■■□□ 2.26
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms