Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC18.53■□□□□ 0.56
FOXN3O00409 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
FOXN3O00409 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC18.53■□□□□ 0.56
FOXN3O00409 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC18.53■□□□□ 0.56
FOXN3O00409 AGGF1P2-201ENST00000426656 2106 ntBASIC18.53■□□□□ 0.56
FOXN3O00409 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC18.53■□□□□ 0.56
FOXN3O00409 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
FOXN3O00409 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
FOXN3O00409 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 AC004817.3-201ENST00000602957 2129 ntBASIC18.52■□□□□ 0.56
FOXN3O00409 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 AP005117.1-201ENST00000584346 1413 ntBASIC18.52■□□□□ 0.56
FOXN3O00409 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.52■□□□□ 0.56
FOXN3O00409 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC18.52■□□□□ 0.56
FOXN3O00409 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXN3O00409 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.52■□□□□ 0.56
FOXN3O00409 SIGLEC30P-201ENST00000455569 941 ntBASIC18.52■□□□□ 0.56
FOXN3O00409 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC18.52■□□□□ 0.56
FOXN3O00409 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
FOXN3O00409 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
FOXN3O00409 LCORL-201ENST00000326877 5604 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
FOXN3O00409 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.55
FOXN3O00409 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
FOXN3O00409 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
FOXN3O00409 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC18.52■□□□□ 0.55
FOXN3O00409 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 ANKMY1-202ENST00000361678 2499 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 SPRED2-206ENST00000443619 1800 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
FOXN3O00409 SLC2A5-201ENST00000377414 2344 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
FOXN3O00409 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 NMU-205ENST00000511469 756 ntTSL 3 BASIC18.51■□□□□ 0.55
FOXN3O00409 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC18.51■□□□□ 0.55
FOXN3O00409 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 AP001269.4-201ENST00000609611 512 ntBASIC18.51■□□□□ 0.55
FOXN3O00409 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 DPEP1-203ENST00000421184 1647 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
FOXN3O00409 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
FOXN3O00409 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
FOXN3O00409 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
FOXN3O00409 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
FOXN3O00409 STX3-203ENST00000529177 1571 ntTSL 2 BASIC18.51■□□□□ 0.55
FOXN3O00409 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 SIGLEC16-201ENST00000599858 1437 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
FOXN3O00409 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 AC079776.2-201ENST00000641154 1609 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXN3O00409 TLE1-202ENST00000376484 666 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXN3O00409 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXN3O00409 HCG4P8-203ENST00000443049 980 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 NUS1P1-201ENST00000446295 882 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 MIR3652-201ENST00000579335 131 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.5■□□□□ 0.55
FOXN3O00409 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
FOXN3O00409 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 AC073592.4-201ENST00000623827 446 ntBASIC18.5■□□□□ 0.55
FOXN3O00409 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC18.5■□□□□ 0.55
FOXN3O00409 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC18.5■□□□□ 0.55
FOXN3O00409 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
FOXN3O00409 OVOL1-203ENST00000532448 1774 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms