Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 FALEC-201ENST00000416894 566 ntTSL 3 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 AC069335.1-201ENST00000489972 472 ntBASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 AC026120.1-201ENST00000611536 926 ntBASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC32.69■■■□□ 2.82
SHROOM4Q9ULL8 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 MNT-208ENST00000575394 606 ntTSL 4 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 CAP2-202ENST00000378990 1812 ntTSL 2 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 AL135999.2-201ENST00000622438 1686 ntBASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC32.68■■■□□ 2.82
SHROOM4Q9ULL8 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 COX5BP8-201ENST00000416911 349 ntBASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 TSFM-210ENST00000550559 897 ntTSL 5 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 AC140878.1-201ENST00000565277 250 ntBASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 AL359881.2-201ENST00000602973 570 ntBASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 NOP2-220ENST00000545915 630 ntTSL 2 BASIC32.67■■■□□ 2.82
SHROOM4Q9ULL8 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 CABP2-201ENST00000294288 925 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 THOC7-201ENST00000295899 990 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 WASHC3-213ENST00000545679 865 ntTSL 2 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 NEFHP1-201ENST00000412845 2629 ntBASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 AL590787.1-201ENST00000568856 1315 ntBASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 COBL-202ENST00000395540 2332 ntTSL 1 (best) BASIC32.66■■■□□ 2.82
SHROOM4Q9ULL8 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 PNKD-201ENST00000248451 758 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 AC107890.1-201ENST00000422478 521 ntBASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 KRT18P32-201ENST00000424695 1287 ntBASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 AC046185.3-201ENST00000623228 1824 ntBASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC32.65■■■□□ 2.82
SHROOM4Q9ULL8 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
SHROOM4Q9ULL8 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC32.64■■■□□ 2.82
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms