Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 CIPC-205ENST00000555437 566 ntTSL 3 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 AC034105.1-201ENST00000563488 319 ntBASIC17.41■□□□□ 0.38
LHX3Q9UBR4 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 Z83851.2-201ENST00000609564 659 ntBASIC17.41■□□□□ 0.38
LHX3Q9UBR4 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 AF228730.7-201ENST00000641842 219 ntBASIC17.41■□□□□ 0.38
LHX3Q9UBR4 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 HNRNPRP1-201ENST00000453465 1695 ntBASIC17.41■□□□□ 0.38
LHX3Q9UBR4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
LHX3Q9UBR4 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 PAWRP1-201ENST00000451083 565 ntBASIC17.4■□□□□ 0.38
LHX3Q9UBR4 AC106730.1-201ENST00000566722 1090 ntBASIC17.4■□□□□ 0.38
LHX3Q9UBR4 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
LHX3Q9UBR4 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.38
LHX3Q9UBR4 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.39■□□□□ 0.38
LHX3Q9UBR4 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
LHX3Q9UBR4 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.38
LHX3Q9UBR4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.39■□□□□ 0.37
LHX3Q9UBR4 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.39■□□□□ 0.37
LHX3Q9UBR4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
LHX3Q9UBR4 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 PI4KAP1-204ENST00000612579 1703 ntBASIC17.38■□□□□ 0.37
LHX3Q9UBR4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 NUTM2B-AS1-211ENST00000601369 1233 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 LINC02012-201ENST00000608206 1725 ntBASIC17.38■□□□□ 0.37
LHX3Q9UBR4 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC17.38■□□□□ 0.37
LHX3Q9UBR4 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
LHX3Q9UBR4 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
LHX3Q9UBR4 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
LHX3Q9UBR4 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms