Protein–RNA interactions for Protein: Q9P244

LRFN1, Leucine-rich repeat and fibronectin type III domain-containing protein 1, humanhuman

Predictions only

Length 771 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRFN1Q9P244 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC15.91■□□□□ 0.14
LRFN1Q9P244 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC15.91■□□□□ 0.14
LRFN1Q9P244 AC007613.1-201ENST00000572811 2597 ntBASIC15.91■□□□□ 0.14
LRFN1Q9P244 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 RAPH1-201ENST00000308091 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC15.91■□□□□ 0.14
LRFN1Q9P244 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.91■□□□□ 0.14
LRFN1Q9P244 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 TRA2B-202ENST00000342294 288 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ENSA-206ENST00000361631 725 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 PTCHD3P3-201ENST00000403073 906 ntBASIC15.9■□□□□ 0.14
LRFN1Q9P244 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ACTG1P4-201ENST00000425123 1122 ntBASIC15.9■□□□□ 0.14
LRFN1Q9P244 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 AL805961.1-202ENST00000641562 540 ntBASIC15.9■□□□□ 0.14
LRFN1Q9P244 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC15.9■□□□□ 0.14
LRFN1Q9P244 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
LRFN1Q9P244 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.14
LRFN1Q9P244 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.14
LRFN1Q9P244 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 ZNF668-202ENST00000394983 2717 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 PCGF3-201ENST00000362003 5685 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 AL139327.4-201ENST00000612362 153 ntBASIC15.89■□□□□ 0.13
LRFN1Q9P244 AC004790.2-201ENST00000623588 572 ntBASIC15.89■□□□□ 0.13
LRFN1Q9P244 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
LRFN1Q9P244 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
LRFN1Q9P244 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms