Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 EDN3-203ENST00000371025 1153 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 DUX4L17-201ENST00000557360 1267 ntBASIC18.56■□□□□ 0.56
SIX2Q9NPC8 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 XXYLT1-205ENST00000437101 2149 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 OS9-205ENST00000413095 1660 ntTSL 2 BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SIX2Q9NPC8 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 DYNC1I1-212ENST00000630942 2249 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 EMD-201ENST00000369835 966 ntTSL 3 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 FAM53C-211ENST00000513056 923 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AL732292.2-201ENST00000609649 430 ntBASIC18.55■□□□□ 0.56
SIX2Q9NPC8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 STAP2-201ENST00000594605 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AC097637.2-201ENST00000624096 1997 ntBASIC18.55■□□□□ 0.56
SIX2Q9NPC8 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.55■□□□□ 0.56
SIX2Q9NPC8 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 PRRX1-202ENST00000367760 2217 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 AC106795.1-205ENST00000512851 1056 ntBASIC18.54■□□□□ 0.56
SIX2Q9NPC8 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC18.54■□□□□ 0.56
SIX2Q9NPC8 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SIX2Q9NPC8 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 56 ms