Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RPSAP43-201ENST00000402237 625 ntBASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 DNAJB3-201ENST00000446806 729 ntBASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RPS15P9-201ENST00000494093 319 ntBASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 AL353135.1-201ENST00000606729 504 ntBASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 SGCE-206ENST00000445866 1666 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 FZD10-202ENST00000539839 3282 ntBASIC18.98■□□□□ 0.63
TRAIPQ9BWF2 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 TRA2A-211ENST00000538367 2142 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 MFSD11-220ENST00000621483 2850 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 LYPLA2-204ENST00000374505 907 ntTSL 3 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 GPX1P2-201ENST00000429271 606 ntBASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC007967.2-201ENST00000432613 625 ntBASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC002347.1-201ENST00000569543 541 ntBASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 HOTTIP_1.1-201ENST00000620415 57 ntBASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.97■□□□□ 0.63
TRAIPQ9BWF2 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 MFGE8-202ENST00000268151 1752 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 TMEM145-201ENST00000301204 1768 ntAPPRIS P2 TSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 PCCB-209ENST00000469217 1841 ntAPPRIS ALT2 TSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 ZCWPW1-202ENST00000398027 2356 ntAPPRIS P3 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 FMR1-206ENST00000370477 3437 ntTSL 5 BASIC18.96■□□□□ 0.63
TRAIPQ9BWF2 KIRREL2-205ENST00000592409 2563 ntAPPRIS ALT2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 TSKS-201ENST00000246801 1883 ntAPPRIS P2 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 STAMBPL1-203ENST00000371926 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC18.95■□□□□ 0.62
TRAIPQ9BWF2 AC108073.2-201ENST00000464002 357 ntBASIC18.95■□□□□ 0.62
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms