Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 AC098590.1-201ENST00000468126 897 ntBASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 CENPA-202ENST00000335756 1452 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 AC009102.3-201ENST00000623118 1491 ntBASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 AC116565.2-201ENST00000637674 1854 ntTSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 NBL1-213ENST00000622566 2109 ntAPPRIS P3 TSL 4 BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC13.84□□□□□ -0.19
RPUSD4Q96CM3 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RPUSD4Q96CM3 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.19
RPUSD4Q96CM3 WDR97-201ENST00000323662 6916 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.19
RPUSD4Q96CM3 EDN3-202ENST00000337938 2636 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.19
RPUSD4Q96CM3 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC13.83□□□□□ -0.19
RPUSD4Q96CM3 SDHAP2-201ENST00000455183 2001 ntBASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 PLEKHJ1-211ENST00000589097 2251 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 CACNA1G-205ENST00000360761 7497 ntAPPRIS ALT2 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC012615.6-201ENST00000593201 1697 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC008393.1-201ENST00000499601 1454 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 FUOM-203ENST00000368552 762 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 MIR149-201ENST00000384879 89 ntBASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 REXO2-216ENST00000544196 452 ntTSL 3 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC026471.5-201ENST00000615068 467 ntBASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 ACE-202ENST00000290866 4959 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC002310.5-201ENST00000569360 1515 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 AC100803.2-201ENST00000562459 1963 ntBASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 SLC35A3-224ENST00000640732 1777 ntTSL 5 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 ATG9B-212ENST00000639579 4539 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC13.83□□□□□ -0.2
RPUSD4Q96CM3 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 AC007950.2-201ENST00000615045 2347 ntBASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 ELFN2-201ENST00000402918 8361 ntAPPRIS P1 TSL 4 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 PARD3B-204ENST00000406610 8174 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 PAUPAR-201ENST00000630360 2965 ntBASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 SERPINB6-208ENST00000616722 2047 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 CHDH-201ENST00000315251 7665 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 AC006449.5-201ENST00000610658 2098 ntBASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 AC036111.1-201ENST00000533973 1582 ntBASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 MME-217ENST00000616757 1315 ntTSL 5 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
RPUSD4Q96CM3 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.82□□□□□ -0.2
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms