Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 HNRNPDP1-201ENST00000439535 754 ntBASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 OR7E14P-202ENST00000530490 1290 ntBASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 CYGB-205ENST00000590175 830 ntTSL 3 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AC004706.3-202ENST00000621574 984 ntBASIC17.75■□□□□ 0.43
RTL3Q8N8U3 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
RTL3Q8N8U3 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC17.74■□□□□ 0.43
RTL3Q8N8U3 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 LGALS12-201ENST00000255684 1667 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 HR-201ENST00000312841 5351 ntTSL 5 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 DBI-201ENST00000311521 714 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 SLC25A6P4-201ENST00000586535 553 ntBASIC17.74■□□□□ 0.43
RTL3Q8N8U3 LIN28B-AS1-205ENST00000637414 879 ntTSL 5 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 CCDC177-201ENST00000599174 4131 ntAPPRIS P1 TSL 3 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 AGFG1-201ENST00000310078 8668 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 BCL2-202ENST00000398117 7461 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 EGFEM1P-202ENST00000431685 1563 ntBASIC17.74■□□□□ 0.43
RTL3Q8N8U3 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
RTL3Q8N8U3 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 SMPD1-201ENST00000342245 2452 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 MRPL3P1-201ENST00000400109 1033 ntBASIC17.73■□□□□ 0.43
RTL3Q8N8U3 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 AC009078.2-202ENST00000463353 338 ntBASIC17.73■□□□□ 0.43
RTL3Q8N8U3 ARTN-206ENST00000472435 402 ntTSL 3 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 AC006557.2-201ENST00000592985 1240 ntBASIC17.73■□□□□ 0.43
RTL3Q8N8U3 AL773604.1-201ENST00000617417 272 ntBASIC17.73■□□□□ 0.43
RTL3Q8N8U3 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
RTL3Q8N8U3 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC17.72■□□□□ 0.43
RTL3Q8N8U3 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms