Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 PCDHA12-202ENST00000613593 2588 ntBASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 FZD10-202ENST00000539839 3282 ntBASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 CALY-203ENST00000368558 825 ntTSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 PON3-203ENST00000427422 894 ntTSL 3 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 AC012313.1-201ENST00000593393 3059 ntBASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 TLE2-217ENST00000590536 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
SH3RF1Q7Z6J0 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 AC022211.2-201ENST00000585075 2527 ntBASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 KRT18P27-201ENST00000427733 1299 ntBASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 AC009053.2-201ENST00000563701 2365 ntBASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC19.79■□□□□ 0.76
SH3RF1Q7Z6J0 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC010460.3-201ENST00000511359 1579 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 CTNS-203ENST00000399306 803 ntTSL 3 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 FAM8A3P-201ENST00000427218 844 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC005020.2-201ENST00000455905 830 ntAPPRIS P1 TSL 3 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC108751.1-201ENST00000490852 363 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC092364.2-202ENST00000597012 1073 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC092865.6-201ENST00000642101 219 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 COQ8A-201ENST00000366777 2872 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 AC004817.3-201ENST00000602957 2129 ntBASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
SH3RF1Q7Z6J0 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC19.77■□□□□ 0.76
SH3RF1Q7Z6J0 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC19.77■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms