Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AL023806.1-201ENST00000603994 1649 ntBASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 IFNGR1-201ENST00000367739 2139 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC20.12■□□□□ 0.81
CCDC144BQ3MJ40 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 CTSB-204ENST00000453527 2011 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 BX005266.1-201ENST00000473402 457 ntBASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AL691403.2-201ENST00000618460 490 ntBASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CCDC144BQ3MJ40 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AC079776.2-201ENST00000641154 1609 ntBASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 UPF3AP3-201ENST00000420996 769 ntBASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 LAGE3P1-201ENST00000425356 484 ntBASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 COX5A-202ENST00000562233 441 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AC010327.4-202ENST00000591484 748 ntBASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 BCAM-206ENST00000589651 2686 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CCDC144BQ3MJ40 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 PMPCAP1-201ENST00000508114 1576 ntBASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 AC010460.3-201ENST00000511359 1579 ntBASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CCDC144BQ3MJ40 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC20.09■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms