Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 SBF2-AS1-201ENST00000498905 2709 ntTSL 5 BASIC18.56■□□□□ 0.56
VCPP55072 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC18.56■□□□□ 0.56
VCPP55072 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 BEX3-201ENST00000361298 921 ntTSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 KRT18P65-201ENST00000439811 1286 ntBASIC18.56■□□□□ 0.56
VCPP55072 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC18.56■□□□□ 0.56
VCPP55072 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.56■□□□□ 0.56
VCPP55072 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC18.56■□□□□ 0.56
VCPP55072 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 AC025062.2-201ENST00000605477 670 ntBASIC18.56■□□□□ 0.56
VCPP55072 AC008735.5-201ENST00000623544 497 ntBASIC18.56■□□□□ 0.56
VCPP55072 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 AC141586.5-201ENST00000624546 2050 ntBASIC18.56■□□□□ 0.56
VCPP55072 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
VCPP55072 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
VCPP55072 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
VCPP55072 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 AC108860.2-201ENST00000562760 2183 ntBASIC18.55■□□□□ 0.56
VCPP55072 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC18.55■□□□□ 0.56
VCPP55072 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC18.55■□□□□ 0.56
VCPP55072 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 AP002414.3-201ENST00000589352 1468 ntBASIC18.55■□□□□ 0.56
VCPP55072 UBXN1-201ENST00000294119 1291 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC18.55■□□□□ 0.56
VCPP55072 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC18.55■□□□□ 0.56
VCPP55072 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.55■□□□□ 0.56
VCPP55072 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
VCPP55072 NDUFS7-210ENST00000539480 1743 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC18.54■□□□□ 0.56
VCPP55072 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 KCNQ2-213ENST00000626839 9213 ntAPPRIS ALT1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 INIP-202ENST00000374236 874 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 CRCP-205ENST00000431089 942 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 OST4-202ENST00000447619 458 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC18.54■□□□□ 0.56
VCPP55072 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC18.54■□□□□ 0.56
VCPP55072 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC18.54■□□□□ 0.56
VCPP55072 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC18.54■□□□□ 0.56
VCPP55072 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 AP005117.1-201ENST00000584346 1413 ntBASIC18.54■□□□□ 0.56
VCPP55072 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC18.54■□□□□ 0.56
VCPP55072 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC18.54■□□□□ 0.56
VCPP55072 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
VCPP55072 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.54■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms