Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC17.89■□□□□ 0.45
NEK3P51956 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.89■□□□□ 0.45
NEK3P51956 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.89■□□□□ 0.45
NEK3P51956 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 RBM17P3-201ENST00000417687 1192 ntBASIC17.89■□□□□ 0.45
NEK3P51956 AC096633.1-201ENST00000422446 749 ntBASIC17.89■□□□□ 0.45
NEK3P51956 AC007967.3-201ENST00000434308 558 ntBASIC17.89■□□□□ 0.45
NEK3P51956 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.89■□□□□ 0.45
NEK3P51956 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.89■□□□□ 0.45
NEK3P51956 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC17.89■□□□□ 0.45
NEK3P51956 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.89■□□□□ 0.45
NEK3P51956 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 MACF1-233ENST00000602421 1423 ntTSL 2 BASIC17.89■□□□□ 0.45
NEK3P51956 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.88■□□□□ 0.45
NEK3P51956 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.88■□□□□ 0.45
NEK3P51956 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 HLA-J-201ENST00000462773 1622 ntBASIC17.88■□□□□ 0.45
NEK3P51956 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.88■□□□□ 0.45
NEK3P51956 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC17.88■□□□□ 0.45
NEK3P51956 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 AC106795.1-205ENST00000512851 1056 ntBASIC17.88■□□□□ 0.45
NEK3P51956 AL662844.1-201ENST00000546340 181 ntBASIC17.88■□□□□ 0.45
NEK3P51956 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.88■□□□□ 0.45
NEK3P51956 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 WDR88-203ENST00000592765 651 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.88■□□□□ 0.45
NEK3P51956 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.88■□□□□ 0.45
NEK3P51956 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.88■□□□□ 0.45
NEK3P51956 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC17.87■□□□□ 0.45
NEK3P51956 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC17.87■□□□□ 0.45
NEK3P51956 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC17.87■□□□□ 0.45
NEK3P51956 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.87■□□□□ 0.45
NEK3P51956 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.87■□□□□ 0.45
NEK3P51956 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 TSTD3-201ENST00000452647 962 ntAPPRIS P2 TSL 2 BASIC17.87■□□□□ 0.45
NEK3P51956 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC17.87■□□□□ 0.45
NEK3P51956 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC17.87■□□□□ 0.45
NEK3P51956 AP001269.4-201ENST00000609611 512 ntBASIC17.87■□□□□ 0.45
NEK3P51956 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC17.87■□□□□ 0.45
NEK3P51956 AL355877.3-201ENST00000622820 899 ntBASIC17.87■□□□□ 0.45
NEK3P51956 TP73-AS1-207ENST00000624167 988 ntBASIC17.87■□□□□ 0.45
NEK3P51956 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.87■□□□□ 0.45
NEK3P51956 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC17.87■□□□□ 0.45
NEK3P51956 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC17.87■□□□□ 0.45
NEK3P51956 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 AL118508.1-201ENST00000613502 2345 ntBASIC17.87■□□□□ 0.45
NEK3P51956 SLC52A1-201ENST00000254853 2377 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.87■□□□□ 0.45
NEK3P51956 PRRT2-219ENST00000637565 1733 ntTSL 5 BASIC17.86■□□□□ 0.45
NEK3P51956 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
NEK3P51956 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
NEK3P51956 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
NEK3P51956 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.86■□□□□ 0.45
NEK3P51956 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.86■□□□□ 0.45
NEK3P51956 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms