Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC21.6■■□□□ 1.05
RFC4P35249 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC21.6■■□□□ 1.05
RFC4P35249 GOLGA6L11P-201ENST00000417252 1298 ntBASIC21.6■■□□□ 1.05
RFC4P35249 AC005412.3-201ENST00000580309 715 ntBASIC21.6■■□□□ 1.05
RFC4P35249 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.6■■□□□ 1.05
RFC4P35249 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC21.6■■□□□ 1.05
RFC4P35249 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 USP49-202ENST00000373010 2446 ntTSL 5 BASIC21.6■■□□□ 1.05
RFC4P35249 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC21.6■■□□□ 1.05
RFC4P35249 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC21.6■■□□□ 1.05
RFC4P35249 FIP1L1-203ENST00000358575 2180 ntAPPRIS P4 TSL 2 BASIC21.6■■□□□ 1.05
RFC4P35249 AC012569.1-201ENST00000591191 1524 ntBASIC21.6■■□□□ 1.05
RFC4P35249 CD40-207ENST00000620709 1522 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
RFC4P35249 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 SERPINB6-201ENST00000335686 1604 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC21.59■■□□□ 1.05
RFC4P35249 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC21.59■■□□□ 1.05
RFC4P35249 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.59■■□□□ 1.05
RFC4P35249 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.59■■□□□ 1.05
RFC4P35249 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC21.59■■□□□ 1.05
RFC4P35249 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
RFC4P35249 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC21.58■■□□□ 1.05
RFC4P35249 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC21.58■■□□□ 1.05
RFC4P35249 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC21.58■■□□□ 1.05
RFC4P35249 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC21.58■■□□□ 1.05
RFC4P35249 DKK3-202ENST00000396505 2650 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC21.58■■□□□ 1.05
RFC4P35249 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC21.58■■□□□ 1.05
RFC4P35249 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 PPP6R2P1-201ENST00000450880 1275 ntBASIC21.58■■□□□ 1.05
RFC4P35249 GATD1-206ENST00000526325 756 ntTSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC21.58■■□□□ 1.05
RFC4P35249 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
RFC4P35249 HNRNPRP1-201ENST00000453465 1695 ntBASIC21.58■■□□□ 1.05
RFC4P35249 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
RFC4P35249 OSR2-209ENST00000522510 1528 ntAPPRIS P1 TSL 2 BASIC21.58■■□□□ 1.04
RFC4P35249 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC21.58■■□□□ 1.04
RFC4P35249 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC21.58■■□□□ 1.04
RFC4P35249 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RFC4P35249 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
RFC4P35249 PDGFA-201ENST00000354513 1308 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC21.57■■□□□ 1.04
RFC4P35249 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC21.57■■□□□ 1.04
RFC4P35249 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
RFC4P35249 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC21.57■■□□□ 1.04
RFC4P35249 CRB3P1-201ENST00000449338 276 ntBASIC21.57■■□□□ 1.04
RFC4P35249 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.57■■□□□ 1.04
RFC4P35249 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC21.57■■□□□ 1.04
RFC4P35249 DMRT2-201ENST00000259622 2459 ntTSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
RFC4P35249 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC21.57■■□□□ 1.04
RFC4P35249 ZNF623-203ENST00000526926 2612 ntAPPRIS ALT2 TSL 2 BASIC21.57■■□□□ 1.04
RFC4P35249 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
RFC4P35249 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 31.2 ms