Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC19.45■□□□□ 0.7
CIITAP33076 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 MIR574-201ENST00000385209 96 ntBASIC19.45■□□□□ 0.7
CIITAP33076 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.45■□□□□ 0.7
CIITAP33076 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 GPR135-201ENST00000395116 4578 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CIITAP33076 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
CIITAP33076 MADCAM1-204ENST00000587541 1723 ntTSL 2 BASIC19.45■□□□□ 0.7
CIITAP33076 PI4KAP1-204ENST00000612579 1703 ntBASIC19.45■□□□□ 0.7
CIITAP33076 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC19.44■□□□□ 0.7
CIITAP33076 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.44■□□□□ 0.7
CIITAP33076 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 CMPK1-205ENST00000471289 816 ntTSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC19.44■□□□□ 0.7
CIITAP33076 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 OR7E47P-204ENST00000575924 449 ntBASIC19.44■□□□□ 0.7
CIITAP33076 ARMC7-203ENST00000581078 1002 ntTSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC19.44■□□□□ 0.7
CIITAP33076 AC004790.2-201ENST00000623588 572 ntBASIC19.44■□□□□ 0.7
CIITAP33076 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CIITAP33076 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
CIITAP33076 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC19.44■□□□□ 0.7
CIITAP33076 EPHA10-201ENST00000319637 2050 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
CIITAP33076 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CIITAP33076 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC19.43■□□□□ 0.7
CIITAP33076 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.43■□□□□ 0.7
CIITAP33076 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CIITAP33076 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 PTGER3-208ENST00000370932 1841 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC19.43■□□□□ 0.7
CIITAP33076 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 RHBDF1P1-201ENST00000427504 1941 ntBASIC19.43■□□□□ 0.7
CIITAP33076 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CIITAP33076 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.43■□□□□ 0.7
CIITAP33076 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC19.43■□□□□ 0.7
CIITAP33076 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 LINC02012-201ENST00000608206 1725 ntBASIC19.42■□□□□ 0.7
CIITAP33076 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
CIITAP33076 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 AC139713.2-201ENST00000641328 2723 ntBASIC19.42■□□□□ 0.7
CIITAP33076 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CIITAP33076 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC19.42■□□□□ 0.7
CIITAP33076 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CIITAP33076 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CIITAP33076 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.42■□□□□ 0.7
CIITAP33076 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.42■□□□□ 0.7
CIITAP33076 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms