Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A5P29400 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC20.54■□□□□ 0.88
COL4A5P29400 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC20.54■□□□□ 0.88
COL4A5P29400 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 ARSEP1-201ENST00000420443 635 ntBASIC20.53■□□□□ 0.88
COL4A5P29400 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 AL358472.5-202ENST00000641448 1267 ntBASIC20.53■□□□□ 0.88
COL4A5P29400 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 AL353732.1-201ENST00000569618 1459 ntBASIC20.53■□□□□ 0.88
COL4A5P29400 AP003071.5-201ENST00000641568 2695 ntAPPRIS P1 BASIC20.53■□□□□ 0.88
COL4A5P29400 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.53■□□□□ 0.88
COL4A5P29400 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC20.53■□□□□ 0.88
COL4A5P29400 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.53■□□□□ 0.88
COL4A5P29400 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC20.52■□□□□ 0.88
COL4A5P29400 AC093503.3-201ENST00000624917 2352 ntBASIC20.52■□□□□ 0.88
COL4A5P29400 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL4A5P29400 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.52■□□□□ 0.88
COL4A5P29400 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
COL4A5P29400 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC20.52■□□□□ 0.88
COL4A5P29400 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC20.52■□□□□ 0.88
COL4A5P29400 AC027369.6-201ENST00000525520 931 ntBASIC20.52■□□□□ 0.88
COL4A5P29400 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC20.52■□□□□ 0.88
COL4A5P29400 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC20.52■□□□□ 0.88
COL4A5P29400 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.52■□□□□ 0.88
COL4A5P29400 NKG7-205ENST00000600427 520 ntTSL 3 BASIC20.52■□□□□ 0.88
COL4A5P29400 ALDH3B1-203ENST00000612297 1231 ntTSL 3 BASIC20.52■□□□□ 0.88
COL4A5P29400 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC20.52■□□□□ 0.88
COL4A5P29400 CCDC151-201ENST00000356392 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 MST1R-214ENST00000613534 2025 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
COL4A5P29400 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL4A5P29400 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC20.52■□□□□ 0.87
COL4A5P29400 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
COL4A5P29400 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC20.52■□□□□ 0.87
COL4A5P29400 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 MIB2-203ENST00000378712 2890 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A5P29400 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A5P29400 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A5P29400 AL359881.2-201ENST00000602973 570 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 AC008738.7-201ENST00000609744 511 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 MIR6752-201ENST00000618442 71 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 IGHV3-72-202ENST00000621503 303 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 ATRIP-201ENST00000320211 2590 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
COL4A5P29400 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC20.51■□□□□ 0.87
COL4A5P29400 ATP5G2P4-201ENST00000442175 420 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC20.51■□□□□ 0.87
COL4A5P29400 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC20.51■□□□□ 0.87
COL4A5P29400 SLC25A24-204ENST00000569674 2357 ntBASIC20.51■□□□□ 0.87
COL4A5P29400 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
COL4A5P29400 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC20.5■□□□□ 0.87
COL4A5P29400 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC20.5■□□□□ 0.87
COL4A5P29400 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 AP000974.1-201ENST00000623909 2387 ntBASIC20.5■□□□□ 0.87
COL4A5P29400 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 SLC25A1P3-201ENST00000395415 828 ntBASIC20.5■□□□□ 0.87
COL4A5P29400 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC20.5■□□□□ 0.87
COL4A5P29400 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 AC022494.1-201ENST00000466044 728 ntBASIC20.5■□□□□ 0.87
COL4A5P29400 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC20.5■□□□□ 0.87
COL4A5P29400 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.5■□□□□ 0.87
COL4A5P29400 AC004840.1-201ENST00000636359 365 ntBASIC20.5■□□□□ 0.87
COL4A5P29400 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC20.5■□□□□ 0.87
COL4A5P29400 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
COL4A5P29400 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.5■□□□□ 0.87
COL4A5P29400 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC20.5■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms