Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGB1P09429 AC091304.2-201ENST00000564639 760 ntBASIC20.43■□□□□ 0.86
HMGB1P09429 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC20.43■□□□□ 0.86
HMGB1P09429 COPE-211ENST00000600932 1144 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC20.43■□□□□ 0.86
HMGB1P09429 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 USP3-AS1-201ENST00000558831 1784 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC20.43■□□□□ 0.86
HMGB1P09429 AD000864.1-201ENST00000624076 2295 ntBASIC20.43■□□□□ 0.86
HMGB1P09429 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 GPR89P-201ENST00000407924 1495 ntBASIC20.43■□□□□ 0.86
HMGB1P09429 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HMGB1P09429 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC20.43■□□□□ 0.86
HMGB1P09429 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC20.42■□□□□ 0.86
HMGB1P09429 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC20.42■□□□□ 0.86
HMGB1P09429 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGB1P09429 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.42■□□□□ 0.86
HMGB1P09429 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HMGB1P09429 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.42■□□□□ 0.86
HMGB1P09429 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC20.42■□□□□ 0.86
HMGB1P09429 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.42■□□□□ 0.86
HMGB1P09429 AC060834.1-201ENST00000443027 2032 ntBASIC20.42■□□□□ 0.86
HMGB1P09429 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC20.42■□□□□ 0.86
HMGB1P09429 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HMGB1P09429 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 AC097637.2-201ENST00000624096 1997 ntBASIC20.41■□□□□ 0.86
HMGB1P09429 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.41■□□□□ 0.86
HMGB1P09429 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 AC022211.2-201ENST00000585075 2527 ntBASIC20.41■□□□□ 0.86
HMGB1P09429 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC20.41■□□□□ 0.86
HMGB1P09429 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 HOXB-AS2-201ENST00000464382 845 ntTSL 4 BASIC20.41■□□□□ 0.86
HMGB1P09429 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC20.41■□□□□ 0.86
HMGB1P09429 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 AL732292.2-201ENST00000609649 430 ntBASIC20.41■□□□□ 0.86
HMGB1P09429 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC20.41■□□□□ 0.86
HMGB1P09429 AL139288.1-201ENST00000623748 933 ntBASIC20.41■□□□□ 0.86
HMGB1P09429 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.41■□□□□ 0.86
HMGB1P09429 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC20.41■□□□□ 0.86
HMGB1P09429 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HMGB1P09429 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 TBC1D20-201ENST00000354200 4466 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 PCDHA13-201ENST00000289272 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HMGB1P09429 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.4■□□□□ 0.86
HMGB1P09429 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC20.4■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms