Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 HLA-DRB1-201ENST00000360004 1229 ntAPPRIS P1 BASIC13.48□□□□□ -0.25
CXCL1P09341 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC13.48□□□□□ -0.25
CXCL1P09341 KSR1P1-201ENST00000446298 240 ntBASIC13.48□□□□□ -0.25
CXCL1P09341 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC13.48□□□□□ -0.25
CXCL1P09341 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 AC069544.1-201ENST00000609399 999 ntBASIC13.48□□□□□ -0.25
CXCL1P09341 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC13.48□□□□□ -0.25
CXCL1P09341 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.48□□□□□ -0.25
CXCL1P09341 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC13.48□□□□□ -0.25
CXCL1P09341 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC13.48□□□□□ -0.25
CXCL1P09341 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 AC073347.1-201ENST00000421633 2643 ntBASIC13.47□□□□□ -0.25
CXCL1P09341 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 GRB2-201ENST00000316615 3181 ntTSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 XK-201ENST00000378616 5206 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 ARHGEF10-201ENST00000349830 5590 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 NDUFB10-201ENST00000268668 705 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CXCL1P09341 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 AC239809.2-201ENST00000415381 517 ntBASIC13.47□□□□□ -0.25
CXCL1P09341 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC13.47□□□□□ -0.25
CXCL1P09341 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC13.47□□□□□ -0.25
CXCL1P09341 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC13.47□□□□□ -0.25
CXCL1P09341 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CXCL1P09341 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC13.47□□□□□ -0.25
CXCL1P09341 AC008403.3-201ENST00000598924 454 ntBASIC13.47□□□□□ -0.25
CXCL1P09341 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC13.47□□□□□ -0.25
CXCL1P09341 FMO5-201ENST00000254090 2632 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 Z99756.1-201ENST00000458463 1951 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
CXCL1P09341 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
CXCL1P09341 KRT8P50-201ENST00000562022 1438 ntBASIC13.47□□□□□ -0.25
CXCL1P09341 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC13.47□□□□□ -0.25
CXCL1P09341 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 MAPKAP1-201ENST00000265960 3395 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 FAM110A-202ENST00000304189 1856 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC13.46□□□□□ -0.25
CXCL1P09341 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 CHMP1A-202ENST00000535997 2295 ntTSL 2 BASIC13.46□□□□□ -0.25
CXCL1P09341 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC13.46□□□□□ -0.25
CXCL1P09341 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 COX7A1-201ENST00000292907 762 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 PSMB5-205ENST00000493471 1117 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
CXCL1P09341 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms