Protein–RNA interactions for Protein: P04114

APOB, Apolipoprotein B-100, humanhuman

Known RBP Predictions only

Length 4,563 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOBP04114 IGHV3OR16-16-201ENST00000563644 343 ntBASIC10.65□□□□□ -0.7
APOBP04114 AC017083.2-201ENST00000608069 979 ntBASIC10.65□□□□□ -0.7
APOBP04114 RNA5-8SN1-201ENST00000610460 153 ntBASIC10.65□□□□□ -0.7
APOBP04114 RNA5-8SN5-202ENST00000612463 153 ntBASIC10.65□□□□□ -0.7
APOBP04114 RNA5-8SN4-201ENST00000613359 153 ntBASIC10.65□□□□□ -0.7
APOBP04114 RNA5-8SN5-201ENST00000619471 153 ntBASIC10.65□□□□□ -0.7
APOBP04114 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 AC046185.3-201ENST00000623228 1824 ntBASIC10.65□□□□□ -0.7
APOBP04114 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 SLC27A1-204ENST00000598424 2681 ntTSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC10.65□□□□□ -0.7
APOBP04114 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 AC073389.2-202ENST00000607450 441 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 AL844908.2-201ENST00000609461 460 ntBASIC10.65□□□□□ -0.7
APOBP04114 AL590560.3-201ENST00000623350 461 ntBASIC10.65□□□□□ -0.7
APOBP04114 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 SLC16A5-203ENST00000538213 1842 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 CTSB-220ENST00000531089 1436 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 MPV17-203ENST00000380044 1005 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 ATP5J-205ENST00000400094 589 ntAPPRIS P1 TSL 2 BASIC10.65□□□□□ -0.7
APOBP04114 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 AC105233.2-201ENST00000523697 349 ntBASIC10.65□□□□□ -0.7
APOBP04114 AF228730.5-201ENST00000530288 346 ntBASIC10.65□□□□□ -0.7
APOBP04114 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC10.65□□□□□ -0.7
APOBP04114 AC018529.1-201ENST00000613063 361 ntBASIC10.65□□□□□ -0.7
APOBP04114 MIR6775-201ENST00000617557 69 ntBASIC10.65□□□□□ -0.7
APOBP04114 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC10.65□□□□□ -0.7
APOBP04114 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC10.65□□□□□ -0.7
APOBP04114 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC10.65□□□□□ -0.71
APOBP04114 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
APOBP04114 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
APOBP04114 WDR38-201ENST00000373574 1252 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.71
APOBP04114 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC10.65□□□□□ -0.71
APOBP04114 HLA-V-204ENST00000476601 1289 ntBASIC10.65□□□□□ -0.71
APOBP04114 FUZ-207ENST00000526575 482 ntTSL 4 BASIC10.65□□□□□ -0.71
APOBP04114 AP001107.2-202ENST00000528650 480 ntTSL 3 BASIC10.65□□□□□ -0.71
APOBP04114 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC10.65□□□□□ -0.71
APOBP04114 RPL28-206ENST00000558752 671 ntTSL 3 BASIC10.65□□□□□ -0.71
APOBP04114 AC003101.2-201ENST00000612557 442 ntBASIC10.65□□□□□ -0.71
APOBP04114 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC10.65□□□□□ -0.71
APOBP04114 AL139099.5-201ENST00000635274 300 ntBASIC10.65□□□□□ -0.71
APOBP04114 MIS18BP1-212ENST00000627697 1950 ntTSL 5 BASIC10.65□□□□□ -0.71
APOBP04114 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
APOBP04114 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 NHLH2-201ENST00000320238 2512 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 AP006294.1-201ENST00000415407 339 ntBASIC10.64□□□□□ -0.71
APOBP04114 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 MIR4515-201ENST00000584082 81 ntBASIC10.64□□□□□ -0.71
APOBP04114 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC10.64□□□□□ -0.71
APOBP04114 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC10.64□□□□□ -0.71
APOBP04114 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC10.64□□□□□ -0.71
APOBP04114 LINC00896-202ENST00000609602 2128 ntBASIC10.64□□□□□ -0.71
APOBP04114 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC10.64□□□□□ -0.71
APOBP04114 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
APOBP04114 AL353779.1-201ENST00000434793 351 ntBASIC10.64□□□□□ -0.71
APOBP04114 AC093904.2-201ENST00000495580 418 ntTSL 3 BASIC10.64□□□□□ -0.71
APOBP04114 AC092658.1-201ENST00000505836 891 ntBASIC10.64□□□□□ -0.71
APOBP04114 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC10.64□□□□□ -0.71
APOBP04114 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC10.64□□□□□ -0.71
APOBP04114 RAB43P1-201ENST00000561790 589 ntBASIC10.64□□□□□ -0.71
APOBP04114 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
APOBP04114 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
APOBP04114 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms