Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 GID4-202ENST00000376345 1391 ntTSL 3 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 LSP1-202ENST00000381775 2016 ntAPPRIS ALT2 TSL 2 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 ZNF140-210ENST00000544426 2340 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.03■□□□□ 0.8
CTDNEP1O95476 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CTDNEP1O95476 PRMT1-202ENST00000454376 1327 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.02■□□□□ 0.8
CTDNEP1O95476 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CTDNEP1O95476 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDNEP1O95476 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.79
CTDNEP1O95476 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.02■□□□□ 0.79
CTDNEP1O95476 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.02■□□□□ 0.79
CTDNEP1O95476 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDNEP1O95476 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTDNEP1O95476 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC20.02■□□□□ 0.79
CTDNEP1O95476 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
CTDNEP1O95476 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CTDNEP1O95476 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 ATP5J-201ENST00000284971 614 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 FGFR3P6-201ENST00000457012 610 ntBASIC20.01■□□□□ 0.79
CTDNEP1O95476 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.01■□□□□ 0.79
CTDNEP1O95476 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
CTDNEP1O95476 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 PRR36-202ENST00000618550 4456 ntAPPRIS P2 TSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC20■□□□□ 0.79
CTDNEP1O95476 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC20■□□□□ 0.79
CTDNEP1O95476 C10orf111-201ENST00000624760 1714 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC20■□□□□ 0.79
CTDNEP1O95476 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 RBM17P3-201ENST00000417687 1192 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC20■□□□□ 0.79
CTDNEP1O95476 S100A2-206ENST00000497140 697 ntTSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 SART3-203ENST00000546611 1184 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC20■□□□□ 0.79
CTDNEP1O95476 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC20■□□□□ 0.79
CTDNEP1O95476 MTDHP3-201ENST00000594186 672 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 CLEC4GP1-201ENST00000596555 870 ntBASIC20■□□□□ 0.79
CTDNEP1O95476 AL353135.1-201ENST00000606729 504 ntBASIC20■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 49.9 ms