Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.02■□□□□ 0.32
VPS4BO75351 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC17.02■□□□□ 0.32
VPS4BO75351 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4BO75351 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 FAM83A-202ENST00000518448 5393 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 CELA2A-201ENST00000359621 919 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4BO75351 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS4BO75351 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 AL136038.4-201ENST00000603606 1261 ntBASIC17.02■□□□□ 0.32
VPS4BO75351 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.02■□□□□ 0.32
VPS4BO75351 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC17.02■□□□□ 0.32
VPS4BO75351 ANKRD20A8P-203ENST00000641373 517 ntBASIC17.02■□□□□ 0.32
VPS4BO75351 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC17.02■□□□□ 0.32
VPS4BO75351 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
VPS4BO75351 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC17.02■□□□□ 0.31
VPS4BO75351 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VPS4BO75351 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC17.02■□□□□ 0.31
VPS4BO75351 AL118508.1-201ENST00000613502 2345 ntBASIC17.02■□□□□ 0.31
VPS4BO75351 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 TSC2-222ENST00000568454 5434 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VPS4BO75351 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
VPS4BO75351 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
VPS4BO75351 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VPS4BO75351 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.01■□□□□ 0.31
VPS4BO75351 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 KRT18P13-201ENST00000400056 1290 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 DRAXINP1-201ENST00000437611 948 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4BO75351 AC106795.1-205ENST00000512851 1056 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 PENK-208ENST00000523051 772 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 AP002469.2-201ENST00000531724 424 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 PPOX-214ENST00000535223 664 ntTSL 3 BASIC17.01■□□□□ 0.31
VPS4BO75351 TPM1-218ENST00000559281 851 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS4BO75351 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4BO75351 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS4BO75351 AC120114.3-201ENST00000611923 658 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 AL139327.4-201ENST00000612362 153 ntBASIC17.01■□□□□ 0.31
VPS4BO75351 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.01■□□□□ 0.31
VPS4BO75351 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4BO75351 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC17.01■□□□□ 0.31
VPS4BO75351 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.01■□□□□ 0.31
VPS4BO75351 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
VPS4BO75351 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC17■□□□□ 0.31
VPS4BO75351 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17■□□□□ 0.31
VPS4BO75351 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17■□□□□ 0.31
VPS4BO75351 AC104819.1-201ENST00000504587 486 ntBASIC17■□□□□ 0.31
VPS4BO75351 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17■□□□□ 0.31
VPS4BO75351 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC17■□□□□ 0.31
VPS4BO75351 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VPS4BO75351 SLC25A6P4-201ENST00000586535 553 ntBASIC17■□□□□ 0.31
VPS4BO75351 CALM3-211ENST00000598871 561 ntTSL 4 BASIC17■□□□□ 0.31
VPS4BO75351 AC243773.1-201ENST00000614759 544 ntTSL 5 BASIC17■□□□□ 0.31
VPS4BO75351 AC139530.3-201ENST00000620344 690 ntBASIC17■□□□□ 0.31
VPS4BO75351 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
VPS4BO75351 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
VPS4BO75351 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC17■□□□□ 0.31
VPS4BO75351 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 78.9 ms