Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB3O75112 AC021087.4-201ENST00000563761 564 ntBASIC16.32■□□□□ 0.2
LDB3O75112 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.32■□□□□ 0.2
LDB3O75112 PAM16-208ENST00000573553 722 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC16.32■□□□□ 0.2
LDB3O75112 CRB3-203ENST00000598494 1443 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
LDB3O75112 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 MTDHP4-201ENST00000600287 670 ntBASIC16.32■□□□□ 0.2
LDB3O75112 AL023806.1-201ENST00000603994 1649 ntBASIC16.32■□□□□ 0.2
LDB3O75112 AC097637.2-201ENST00000624096 1997 ntBASIC16.32■□□□□ 0.2
LDB3O75112 AL022326.1-202ENST00000641533 845 ntBASIC16.32■□□□□ 0.2
LDB3O75112 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
LDB3O75112 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
LDB3O75112 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDB3O75112 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 AC016396.2-201ENST00000562575 1417 ntBASIC16.31■□□□□ 0.2
LDB3O75112 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC16.31■□□□□ 0.2
LDB3O75112 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB3O75112 FAM197Y8-203ENST00000450145 560 ntBASIC16.31■□□□□ 0.2
LDB3O75112 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC16.31■□□□□ 0.2
LDB3O75112 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.31■□□□□ 0.2
LDB3O75112 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDB3O75112 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
LDB3O75112 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
LDB3O75112 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.31■□□□□ 0.2
LDB3O75112 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
LDB3O75112 MAP3K13-212ENST00000448876 1681 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
LDB3O75112 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
LDB3O75112 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB3O75112 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB3O75112 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB3O75112 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB3O75112 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB3O75112 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC16.3■□□□□ 0.2
LDB3O75112 AC064862.7-201ENST00000604520 867 ntBASIC16.3■□□□□ 0.2
LDB3O75112 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.3■□□□□ 0.2
LDB3O75112 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC16.3■□□□□ 0.2
LDB3O75112 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
LDB3O75112 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC16.3■□□□□ 0.2
LDB3O75112 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC16.29■□□□□ 0.2
LDB3O75112 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC16.29■□□□□ 0.2
LDB3O75112 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
LDB3O75112 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms