Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 HLA-F-220ENST00000434407 884 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 KRT18P65-201ENST00000439811 1286 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 PSMA1-209ENST00000530457 1527 ntTSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 PPOX-214ENST00000535223 664 ntTSL 3 BASIC14.79□□□□□ -0.04
SDCBPO00560 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 AC016396.2-201ENST00000562575 1417 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 FGF14-AS2-201ENST00000606448 1074 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 SPEG-225ENST00000617028 815 ntTSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC14.79□□□□□ -0.04
SDCBPO00560 LITAF-220ENST00000620789 692 ntTSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 AC006011.2-201ENST00000621313 1158 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 AC046158.3-201ENST00000624947 2558 ntBASIC14.79□□□□□ -0.04
SDCBPO00560 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
SDCBPO00560 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
SDCBPO00560 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
SDCBPO00560 KCNJ8-201ENST00000240662 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 CACNB3-202ENST00000536187 1872 ntTSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 MEX3C-204ENST00000616921 3269 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 SUSD4-203ENST00000344029 1056 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC14.78□□□□□ -0.04
SDCBPO00560 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 AC112907.2-201ENST00000448639 330 ntBASIC14.78□□□□□ -0.04
SDCBPO00560 AP003733.1-201ENST00000491725 852 ntBASIC14.78□□□□□ -0.04
SDCBPO00560 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC14.78□□□□□ -0.04
SDCBPO00560 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC14.78□□□□□ -0.04
SDCBPO00560 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 AC004263.2-201ENST00000617183 678 ntBASIC14.78□□□□□ -0.04
SDCBPO00560 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC14.78□□□□□ -0.04
SDCBPO00560 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC14.78□□□□□ -0.04
SDCBPO00560 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SDCBPO00560 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 OS9-205ENST00000413095 1660 ntTSL 2 BASIC14.77□□□□□ -0.04
SDCBPO00560 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC14.77□□□□□ -0.04
SDCBPO00560 CLIC5-202ENST00000339561 2390 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC14.77□□□□□ -0.04
SDCBPO00560 CAMK2B-203ENST00000347193 1577 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 ARHGAP39-202ENST00000377307 4673 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
SDCBPO00560 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC14.77□□□□□ -0.04
SDCBPO00560 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC14.77□□□□□ -0.04
SDCBPO00560 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
SDCBPO00560 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.77□□□□□ -0.04
SDCBPO00560 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.77□□□□□ -0.04
SDCBPO00560 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC14.77□□□□□ -0.04
SDCBPO00560 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
SDCBPO00560 HOPX-201ENST00000317745 1129 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 46 ms