Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 UPF3AP3-201ENST00000420996 769 ntBASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 PRYP5-201ENST00000451909 266 ntBASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC006557.2-201ENST00000592985 1240 ntBASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 AL118508.1-201ENST00000613502 2345 ntBASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.05■□□□□ 0.32
TMX2-CTNND1H3BSU7 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 FAM49B-214ENST00000519540 2021 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC079776.2-201ENST00000641154 1609 ntBASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC007967.3-201ENST00000434308 558 ntBASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 SPAG1-201ENST00000251809 3748 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 CBL-204ENST00000634840 4813 ntAPPRIS ALT2 TSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 SAMD4A-204ENST00000554335 3003 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC17.04■□□□□ 0.32
TMX2-CTNND1H3BSU7 CHST11-201ENST00000303694 5709 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 TNFSF13-205ENST00000396545 1593 ntAPPRIS ALT1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 AFG3L2-201ENST00000269143 3247 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC17.03■□□□□ 0.32
TMX2-CTNND1H3BSU7 SLC4A1APP2-201ENST00000424054 1259 ntBASIC17.03■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 51.3 ms