Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS9D1Q9Y2B5 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
VPS9D1Q9Y2B5 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 RCN1P2-201ENST00000398357 915 ntBASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 AC092119.3-201ENST00000612618 583 ntBASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.27■□□□□ 0.36
VPS9D1Q9Y2B5 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 RMND5B-201ENST00000313386 1929 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 LINC02012-201ENST00000608206 1725 ntBASIC17.27■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 CROCCP1-201ENST00000426910 5675 ntBASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AC132938.5-201ENST00000624980 1813 ntBASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 RHBDF1P1-201ENST00000427504 1941 ntBASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 ATPIF1-201ENST00000335514 494 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 TMEM213-202ENST00000413208 480 ntAPPRIS ALT2 TSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 GZMM-202ENST00000592501 941 ntTSL 3 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AC099336.1-202ENST00000602961 463 ntBASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PMPCAP1-201ENST00000508114 1576 ntBASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
VPS9D1Q9Y2B5 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 NSDHL-203ENST00000440023 1630 ntAPPRIS P2 TSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 IDH3G-201ENST00000217901 1485 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 VPS13B-201ENST00000355155 2822 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 VWA1-203ENST00000476993 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
VPS9D1Q9Y2B5 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms