Protein–RNA interactions for Protein: Q9UIU6

SIX4, Homeobox protein SIX4, humanhuman

Predictions only

Length 781 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4Q9UIU6 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.5■□□□□ 0.55
SIX4Q9UIU6 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC18.5■□□□□ 0.55
SIX4Q9UIU6 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 KDM2A-202ENST00000398645 6511 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AC108073.2-201ENST00000464002 357 ntBASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AC106730.1-201ENST00000566722 1090 ntBASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AL671883.3-201ENST00000603274 991 ntBASIC18.49■□□□□ 0.55
SIX4Q9UIU6 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 AC062028.1-203ENST00000447433 1472 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 GYPC-202ENST00000356887 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 PPIF-201ENST00000225174 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 FOXP3-201ENST00000376197 1326 ntTSL 2 BASIC18.49■□□□□ 0.55
SIX4Q9UIU6 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 SIM2-201ENST00000290399 4442 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PKD2-201ENST00000237596 5056 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PAWRP1-201ENST00000451083 565 ntBASIC18.48■□□□□ 0.55
SIX4Q9UIU6 AC108751.1-201ENST00000490852 363 ntBASIC18.48■□□□□ 0.55
SIX4Q9UIU6 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 AL023806.1-201ENST00000603994 1649 ntBASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
SIX4Q9UIU6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.47■□□□□ 0.55
SIX4Q9UIU6 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 YIF1B-203ENST00000339413 1225 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 CPEB2-AS1-201ENST00000500394 1630 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
SIX4Q9UIU6 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms