Protein–RNA interactions for Protein: Q9NSE2

CISH, Cytokine-inducible SH2-containing protein, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CISHQ9NSE2 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 LINC00982-205ENST00000420957 435 ntBASIC18.49■□□□□ 0.55
CISHQ9NSE2 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 AC104692.2-201ENST00000603054 253 ntBASIC18.49■□□□□ 0.55
CISHQ9NSE2 CABP1-201ENST00000288616 1369 ntAPPRIS P4 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC18.49■□□□□ 0.55
CISHQ9NSE2 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CISHQ9NSE2 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 ARHGEF28-203ENST00000426542 6118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 FAM197Y8-203ENST00000450145 560 ntBASIC18.48■□□□□ 0.55
CISHQ9NSE2 MSRA-206ENST00000521209 814 ntTSL 3 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
CISHQ9NSE2 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 NCF1C-201ENST00000438382 1427 ntBASIC18.48■□□□□ 0.55
CISHQ9NSE2 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC18.48■□□□□ 0.55
CISHQ9NSE2 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 RAB17-203ENST00000409576 466 ntTSL 3 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 TPM4P1-201ENST00000436100 807 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 RNPS1P1-201ENST00000507437 918 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 AC073648.2-201ENST00000510116 352 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 PNMT-203ENST00000581428 677 ntTSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 CALM3-211ENST00000598871 561 ntTSL 4 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 AL589182.2-201ENST00000619332 1049 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
CISHQ9NSE2 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 TMEM216-201ENST00000334888 1306 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
CISHQ9NSE2 AP001094.4-201ENST00000579008 2176 ntBASIC18.47■□□□□ 0.55
CISHQ9NSE2 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
CISHQ9NSE2 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CISHQ9NSE2 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CISHQ9NSE2 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC18.46■□□□□ 0.55
CISHQ9NSE2 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
CISHQ9NSE2 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC18.46■□□□□ 0.55
CISHQ9NSE2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms