Protein–RNA interactions for Protein: Q9H4D5

NXF3, Nuclear RNA export factor 3, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NXF3Q9H4D5 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 UBE2QL1-201ENST00000399816 4317 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 PRKCI-201ENST00000295797 4950 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NXF3Q9H4D5 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 HLA-DMA-201ENST00000374843 1123 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 MCCD1P2-201ENST00000423228 335 ntBASIC18.66■□□□□ 0.58
NXF3Q9H4D5 AL645941.2-201ENST00000429234 612 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 ALG1L5P-201ENST00000482043 771 ntBASIC18.66■□□□□ 0.58
NXF3Q9H4D5 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 AC096734.2-201ENST00000562054 433 ntBASIC18.66■□□□□ 0.58
NXF3Q9H4D5 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 AC004877.2-201ENST00000623941 599 ntBASIC18.66■□□□□ 0.58
NXF3Q9H4D5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 ZNF133-212ENST00000622607 2660 ntAPPRIS ALT2 TSL 4 BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
NXF3Q9H4D5 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 AC087163.2-201ENST00000457299 853 ntBASIC18.65■□□□□ 0.58
NXF3Q9H4D5 SLC25A6P2-201ENST00000497974 877 ntBASIC18.65■□□□□ 0.58
NXF3Q9H4D5 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 BCAR1-209ENST00000546196 1340 ntBASIC18.65■□□□□ 0.58
NXF3Q9H4D5 NOMO1-201ENST00000287667 4355 ntAPPRIS P2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PCCA-203ENST00000376286 2481 ntTSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC18.65■□□□□ 0.58
NXF3Q9H4D5 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NXF3Q9H4D5 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 MRPS12-203ENST00000407800 1220 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 RHOQP3-201ENST00000437982 621 ntBASIC18.64■□□□□ 0.57
NXF3Q9H4D5 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 KRT19P2-202ENST00000557173 1012 ntBASIC18.64■□□□□ 0.57
NXF3Q9H4D5 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.64■□□□□ 0.57
NXF3Q9H4D5 SF1-203ENST00000377387 2947 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 HNRNPRP1-201ENST00000453465 1695 ntBASIC18.63■□□□□ 0.57
NXF3Q9H4D5 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 WDR74-204ENST00000525239 1736 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
NXF3Q9H4D5 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms