Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 IRF3-203ENST00000377139 1613 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 GALE-201ENST00000374497 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 LINC02228-204ENST00000642115 2962 ntBASIC15.38■□□□□ 0.05
MMP28Q9H239 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC15.38■□□□□ 0.05
MMP28Q9H239 PABPC4-202ENST00000372857 3048 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC15.38■□□□□ 0.05
MMP28Q9H239 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
MMP28Q9H239 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC15.38■□□□□ 0.05
MMP28Q9H239 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC15.37■□□□□ 0.05
MMP28Q9H239 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 H2AFB2-201ENST00000354514 348 ntAPPRIS P1 BASIC15.37■□□□□ 0.05
MMP28Q9H239 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC15.37■□□□□ 0.05
MMP28Q9H239 MIR1238-201ENST00000408483 83 ntBASIC15.37■□□□□ 0.05
MMP28Q9H239 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC15.37■□□□□ 0.05
MMP28Q9H239 TK2-213ENST00000563369 882 ntTSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC15.37■□□□□ 0.05
MMP28Q9H239 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
MMP28Q9H239 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.37■□□□□ 0.05
MMP28Q9H239 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.37■□□□□ 0.05
MMP28Q9H239 RCC2P3-201ENST00000418112 1537 ntBASIC15.37■□□□□ 0.05
MMP28Q9H239 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.37■□□□□ 0.05
MMP28Q9H239 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 WNT1-201ENST00000293549 1185 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 AL390955.1-201ENST00000428694 934 ntBASIC15.36■□□□□ 0.05
MMP28Q9H239 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC15.36■□□□□ 0.05
MMP28Q9H239 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 GLDC-219ENST00000640208 420 ntTSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC15.36■□□□□ 0.05
MMP28Q9H239 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
MMP28Q9H239 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 POM121-203ENST00000434423 3750 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
MMP28Q9H239 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC15.36■□□□□ 0.05
MMP28Q9H239 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.36■□□□□ 0.05
MMP28Q9H239 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ASCC3-207ENST00000522650 2828 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 SLC9A7P1-201ENST00000554295 3311 ntBASIC15.35■□□□□ 0.05
MMP28Q9H239 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
MMP28Q9H239 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
MMP28Q9H239 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
MMP28Q9H239 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms