Protein–RNA interactions for Protein: Q9BXA9

SALL3, Sal-like protein 3, humanhuman

Predictions only

Length 1,300 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SALL3Q9BXA9 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 ANXA8-202ENST00000583448 1971 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 KLHDC3-202ENST00000326974 1909 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 RN7SL510P-201ENST00000581311 263 ntBASIC20.99■□□□□ 0.95
SALL3Q9BXA9 AL031008.1-201ENST00000619963 541 ntBASIC20.99■□□□□ 0.95
SALL3Q9BXA9 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.99■□□□□ 0.95
SALL3Q9BXA9 AC243591.1-201ENST00000452967 1364 ntBASIC20.99■□□□□ 0.95
SALL3Q9BXA9 AC006504.4-201ENST00000592118 1568 ntBASIC20.99■□□□□ 0.95
SALL3Q9BXA9 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 NCOA5-201ENST00000290231 3220 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 BAG5-202ENST00000337322 1960 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 HBA2-201ENST00000251595 605 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AL450487.1-201ENST00000426799 995 ntBASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 DHRS12-203ENST00000444610 1162 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 SCARNA2-201ENST00000458748 420 ntBASIC20.98■□□□□ 0.95
SALL3Q9BXA9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AC139887.3-201ENST00000568585 713 ntBASIC20.98■□□□□ 0.95
SALL3Q9BXA9 TERC-201ENST00000602385 541 ntBASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 AC148477.8-201ENST00000624298 468 ntBASIC20.98■□□□□ 0.95
SALL3Q9BXA9 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 MAEA-202ENST00000303400 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
SALL3Q9BXA9 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 RUNDC3B-203ENST00000394654 2064 ntAPPRIS P4 TSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 GPN3-202ENST00000537466 1491 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 FLJ38576-201ENST00000623820 2459 ntBASIC20.97■□□□□ 0.95
SALL3Q9BXA9 NRG1-216ENST00000523079 2359 ntTSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 PCDHB17P-201ENST00000539533 2393 ntBASIC20.97■□□□□ 0.95
SALL3Q9BXA9 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 LAGE3P1-201ENST00000425356 484 ntBASIC20.97■□□□□ 0.95
SALL3Q9BXA9 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
SALL3Q9BXA9 NKAIN1-201ENST00000373736 2589 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 PTHLH-203ENST00000395872 1318 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 CA9-201ENST00000378357 1618 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 HIST2H3DP1-201ENST00000401004 416 ntBASIC20.96■□□□□ 0.95
SALL3Q9BXA9 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 RPS2P1-201ENST00000434010 821 ntBASIC20.96■□□□□ 0.95
SALL3Q9BXA9 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 RNA5SP419-201ENST00000515908 135 ntBASIC20.96■□□□□ 0.95
SALL3Q9BXA9 AC012640.2-201ENST00000561606 901 ntBASIC20.96■□□□□ 0.95
SALL3Q9BXA9 IRF8-202ENST00000562492 946 ntTSL 3 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 AC020909.1-201ENST00000599632 1265 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
SALL3Q9BXA9 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.95
SALL3Q9BXA9 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC20.95■□□□□ 0.95
SALL3Q9BXA9 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC20.95■□□□□ 0.94
SALL3Q9BXA9 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SALL3Q9BXA9 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC20.95■□□□□ 0.94
SALL3Q9BXA9 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SALL3Q9BXA9 BSG-203ENST00000353555 1616 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SALL3Q9BXA9 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC20.95■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms