Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AC108751.1-201ENST00000490852 363 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AP001160.2-201ENST00000596071 487 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AC064836.3-201ENST00000607928 673 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AL589182.2-201ENST00000619332 1049 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AC073592.5-201ENST00000624854 528 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 AC005593.1-201ENST00000624894 515 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 CROCCP2-202ENST00000412962 2773 ntBASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC21.02■□□□□ 0.96
RPAP1Q9BWH6 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC21.02■□□□□ 0.95
RPAP1Q9BWH6 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 TPR-209ENST00000613151 2478 ntTSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 ELK2BP-201ENST00000415014 1224 ntBASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 URGCP-206ENST00000446958 365 ntTSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 COPE-211ENST00000600932 1144 ntTSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 ZBTB44-201ENST00000357899 2781 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC21.01■□□□□ 0.95
RPAP1Q9BWH6 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 IGHV3-52-201ENST00000519770 353 ntBASIC21■□□□□ 0.95
RPAP1Q9BWH6 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 FAU-209ENST00000531743 697 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 AC022211.2-201ENST00000585075 2527 ntBASIC21■□□□□ 0.95
RPAP1Q9BWH6 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 CBX2-202ENST00000310942 4644 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC21■□□□□ 0.95
RPAP1Q9BWH6 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21■□□□□ 0.95
RPAP1Q9BWH6 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 SORCS3-201ENST00000369699 5530 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 COA5-202ENST00000409997 557 ntTSL 4 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 MOGAT1-201ENST00000446656 1048 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC20.99■□□□□ 0.95
RPAP1Q9BWH6 DHDH-204ENST00000523250 634 ntTSL 5 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 51.5 ms