Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 MED22-202ENST00000371999 987 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 RAB17-203ENST00000409576 466 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 RNF151-202ENST00000569210 853 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 PAM16-208ENST00000573553 722 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 PNMT-203ENST00000581428 677 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 CYB561-217ENST00000582997 877 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 TEAD4-201ENST00000358409 1637 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
VPS35Q96QK1 GID4-202ENST00000376345 1391 ntTSL 3 BASIC17.24■□□□□ 0.35
VPS35Q96QK1 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AC016396.2-201ENST00000562575 1417 ntBASIC17.23■□□□□ 0.35
VPS35Q96QK1 YTHDF3-212ENST00000621413 2370 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AC004817.3-201ENST00000602957 2129 ntBASIC17.23■□□□□ 0.35
VPS35Q96QK1 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 GHRHR-201ENST00000326139 1602 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CUTA-210ENST00000488034 769 ntAPPRIS ALT1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AL662844.1-201ENST00000546340 181 ntBASIC17.23■□□□□ 0.35
VPS35Q96QK1 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AL589182.2-201ENST00000619332 1049 ntBASIC17.23■□□□□ 0.35
VPS35Q96QK1 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CEP78-204ENST00000415759 2623 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.23■□□□□ 0.35
VPS35Q96QK1 AL135999.2-201ENST00000622438 1686 ntBASIC17.23■□□□□ 0.35
VPS35Q96QK1 ILF3-203ENST00000449870 6119 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 MXRA8-202ENST00000342753 2231 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
VPS35Q96QK1 NCF1C-201ENST00000438382 1427 ntBASIC17.22■□□□□ 0.35
VPS35Q96QK1 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 PHPT1-202ENST00000371661 985 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 ACTG1P4-201ENST00000425123 1122 ntBASIC17.22■□□□□ 0.35
VPS35Q96QK1 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 SLC25A6P4-201ENST00000586535 553 ntBASIC17.22■□□□□ 0.35
VPS35Q96QK1 AC012615.3-201ENST00000592884 500 ntTSL 3 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 AC107918.4-202ENST00000641623 219 ntBASIC17.22■□□□□ 0.35
VPS35Q96QK1 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 ZNF274-202ENST00000345813 2678 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
VPS35Q96QK1 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
VPS35Q96QK1 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 TNFRSF14-AS1-205ENST00000449660 1629 ntTSL 2 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
VPS35Q96QK1 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC17.21■□□□□ 0.35
VPS35Q96QK1 RASSF5-205ENST00000581503 5586 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 26.7 ms