Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 FAM25C-201ENST00000617224 319 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AL355877.3-201ENST00000622820 899 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 AL139384.1-201ENST00000612143 3047 ntBASIC20.7■□□□□ 0.9
CHMP4CQ96CF2 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ZNF7-201ENST00000325217 592 ntTSL 4 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ABCD1P5-201ENST00000445663 754 ntBASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 BX005266.1-201ENST00000473402 457 ntBASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 RNPS1P1-201ENST00000507437 918 ntBASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 AC099805.1-202ENST00000519927 1057 ntTSL 5 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 AL161669.4-201ENST00000634353 732 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ACP2-206ENST00000529444 1719 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 HOXA2-201ENST00000222718 1814 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
CHMP4CQ96CF2 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 SFT2D3-201ENST00000310981 3735 ntAPPRIS P1 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 FGFR4-202ENST00000393637 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 CALM3-201ENST00000291295 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 TMED1-207ENST00000591695 809 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 GULP1-206ENST00000409830 1376 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 WDR18-204ENST00000587001 1465 ntTSL 5 BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 AL645608.8-201ENST00000606034 2086 ntBASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
CHMP4CQ96CF2 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 FAM220CP-201ENST00000395253 831 ntBASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 BOC-212ENST00000485230 2173 ntTSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 PAN3-AS1-201ENST00000563843 1351 ntBASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 FST-202ENST00000396947 2538 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
CHMP4CQ96CF2 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.67■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms