Protein–RNA interactions for Protein: Q8IWA6

CCDC60, Coiled-coil domain-containing protein 60, humanhuman

Predicted RBP Predictions only

Length 550 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC60Q8IWA6 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
CCDC60Q8IWA6 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CLDN4-201ENST00000340958 1831 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 LRRFIP2-209ENST00000440230 1989 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 NOMO3-202ENST00000399336 4356 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 SNHG17-206ENST00000436764 973 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 AC002347.1-201ENST00000569543 541 ntBASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 FGFR3-205ENST00000440486 4287 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
CCDC60Q8IWA6 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 HHATL-201ENST00000310417 1750 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 MIR1233-2-201ENST00000408138 82 ntBASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 MIR1233-1-201ENST00000408722 82 ntBASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 GPX1P2-201ENST00000429271 606 ntBASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 HOTTIP_1.1-201ENST00000620415 57 ntBASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 AL513190.1-201ENST00000621254 727 ntBASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 LGI4-201ENST00000310123 2814 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 ARHGAP22-206ENST00000435790 2595 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
CCDC60Q8IWA6 RAPH1-211ENST00000457812 2673 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 SLC25A1P3-201ENST00000395415 828 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 RPSAP43-201ENST00000402237 625 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 ATP6V0CP3-201ENST00000417255 467 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 FIS1-203ENST00000442303 631 ntTSL 3 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 AC087163.2-201ENST00000457299 853 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 SLC25A6P2-201ENST00000497974 877 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 HNRNPRP1-201ENST00000453465 1695 ntBASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 CLDN9-201ENST00000445369 2050 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 NUTM2F-202ENST00000341207 2516 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 NUTM2G-202ENST00000372322 2516 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
CCDC60Q8IWA6 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms