Protein–RNA interactions for Protein: Q7Z6J0

SH3RF1, E3 ubiquitin-protein ligase SH3RF1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SH3RF1Q7Z6J0 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC19.84■□□□□ 0.77
SH3RF1Q7Z6J0 TRIM11-202ENST00000366699 2511 ntTSL 2 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 LAGE3P1-201ENST00000425356 484 ntBASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 HTR5BP-201ENST00000430851 1154 ntBASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 BX005266.1-201ENST00000473402 457 ntBASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 AC005829.1-201ENST00000570002 483 ntBASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC19.83■□□□□ 0.77
SH3RF1Q7Z6J0 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.83■□□□□ 0.76
SH3RF1Q7Z6J0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 AC097374.2-201ENST00000618617 1306 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 MCCD1P2-201ENST00000423228 335 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 ALG1L5P-201ENST00000482043 771 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 MSRA-206ENST00000521209 814 ntTSL 3 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 CHMP1A-208ENST00000550102 803 ntTSL 5 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 SNHG9-202ENST00000564014 471 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 COX5A-206ENST00000568783 571 ntTSL 3 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 MIR4469-201ENST00000583919 79 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 AP000867.4-201ENST00000641616 219 ntBASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 ABCB8-211ENST00000477092 1596 ntTSL 5 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
SH3RF1Q7Z6J0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 LYSMD4-203ENST00000378904 2122 ntBASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 CCDC112-205ENST00000506442 2145 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 CSNK2B-203ENST00000375882 948 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 YBX1P5-201ENST00000509441 847 ntBASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
SH3RF1Q7Z6J0 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms