Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 CENPM-204ENST00000402420 688 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AC005104.2-201ENST00000427818 678 ntBASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AL591424.1-201ENST00000442569 1213 ntBASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AC105339.3-201ENST00000560043 636 ntBASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 DCAF12L2-201ENST00000360028 2599 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 GMCL1P1-201ENST00000463439 1581 ntBASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CCDC144BQ3MJ40 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 PLEKHG5-201ENST00000340850 4715 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 PLEKHG5-211ENST00000535355 4725 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 MCM7-203ENST00000354230 2975 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 AC097374.2-201ENST00000618617 1306 ntBASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 AP002414.3-201ENST00000589352 1468 ntBASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 TBC1D3P5-201ENST00000579401 1545 ntBASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 SP100-208ENST00000427101 1922 ntTSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CCDC144BQ3MJ40 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC144BQ3MJ40 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.82
CCDC144BQ3MJ40 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC20.14■□□□□ 0.82
CCDC144BQ3MJ40 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 SMOC1-201ENST00000361956 2040 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 RNF151-202ENST00000569210 853 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 MNT-208ENST00000575394 606 ntTSL 4 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 SNHG15-206ENST00000580528 1073 ntTSL 2 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CCDC144BQ3MJ40 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 KRT18P3-201ENST00000451602 1288 ntBASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 MSRA-206ENST00000521209 814 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 UNC93B6-202ENST00000528242 690 ntBASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 AC055717.3-201ENST00000622967 595 ntBASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CCDC144BQ3MJ40 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31.6 ms