Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.41■□□□□ 0.54
USP41Q3LFD5 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC18.41■□□□□ 0.54
USP41Q3LFD5 AC025580.3-201ENST00000617932 1424 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 ZNF200-202ENST00000396870 2373 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC074386.1-202ENST00000463561 864 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 CXCL1P1-201ENST00000502804 216 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 CEMP1-201ENST00000565480 519 ntAPPRIS ALT2 TSL 3 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC027796.2-201ENST00000575326 344 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AL139327.4-201ENST00000612362 153 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 LINC01451-201ENST00000623792 534 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 KRT18P28-201ENST00000453838 1332 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 PJA1-202ENST00000374571 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 CFAP100-201ENST00000352312 2086 ntAPPRIS P2 TSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 AC018470.1-201ENST00000624790 3129 ntBASIC18.4■□□□□ 0.54
USP41Q3LFD5 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
USP41Q3LFD5 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
USP41Q3LFD5 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC18.39■□□□□ 0.54
USP41Q3LFD5 AC068880.1-201ENST00000507289 2297 ntBASIC18.39■□□□□ 0.54
USP41Q3LFD5 SKP2-201ENST00000274254 1537 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
USP41Q3LFD5 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 AL354751.1-201ENST00000412768 1863 ntBASIC18.39■□□□□ 0.53
USP41Q3LFD5 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
USP41Q3LFD5 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 BICD1-207ENST00000551848 1962 ntBASIC18.39■□□□□ 0.53
USP41Q3LFD5 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC18.39■□□□□ 0.53
USP41Q3LFD5 AC127496.1-202ENST00000573602 2091 ntTSL 2 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 CNN2P11-201ENST00000429351 262 ntBASIC18.38■□□□□ 0.53
USP41Q3LFD5 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
USP41Q3LFD5 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 RPS15-207ENST00000591032 550 ntTSL 3 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC18.38■□□□□ 0.53
USP41Q3LFD5 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 24.6 ms