Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 PCDHB19P-201ENST00000570871 2371 ntBASIC16.92■□□□□ 0.3
YBX1P67809 TERT-202ENST00000334602 3210 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.92■□□□□ 0.3
YBX1P67809 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 CTNS-203ENST00000399306 803 ntTSL 3 BASIC16.92■□□□□ 0.3
YBX1P67809 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC16.92■□□□□ 0.3
YBX1P67809 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
YBX1P67809 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC16.92■□□□□ 0.3
YBX1P67809 ABCD1P5-201ENST00000445663 754 ntBASIC16.92■□□□□ 0.3
YBX1P67809 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC16.92■□□□□ 0.3
YBX1P67809 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.92■□□□□ 0.3
YBX1P67809 COX5A-204ENST00000567270 579 ntTSL 3 BASIC16.92■□□□□ 0.3
YBX1P67809 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.92■□□□□ 0.3
YBX1P67809 SNHG15-203ENST00000578968 982 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 REXO1L6P-202ENST00000619970 1078 ntBASIC16.92■□□□□ 0.3
YBX1P67809 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC16.92■□□□□ 0.3
YBX1P67809 AP000867.4-201ENST00000641616 219 ntBASIC16.92■□□□□ 0.3
YBX1P67809 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.92■□□□□ 0.3
YBX1P67809 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
YBX1P67809 PMPCAP1-201ENST00000508114 1576 ntBASIC16.92■□□□□ 0.3
YBX1P67809 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 AC060834.1-201ENST00000443027 2032 ntBASIC16.92■□□□□ 0.3
YBX1P67809 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.92■□□□□ 0.3
YBX1P67809 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 AL353593.2-201ENST00000602529 1483 ntBASIC16.92■□□□□ 0.3
YBX1P67809 SLBP-202ENST00000429429 1623 ntTSL 2 BASIC16.92■□□□□ 0.3
YBX1P67809 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
YBX1P67809 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC16.92■□□□□ 0.3
YBX1P67809 QSOX2-201ENST00000358701 4530 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
YBX1P67809 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 LYSMD4-203ENST00000378904 2122 ntBASIC16.91■□□□□ 0.3
YBX1P67809 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
YBX1P67809 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.91■□□□□ 0.3
YBX1P67809 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 AP005117.1-201ENST00000584346 1413 ntBASIC16.91■□□□□ 0.3
YBX1P67809 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 CACNG7-201ENST00000222212 1016 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 CD9-202ENST00000382515 1229 ntTSL 5 BASIC16.91■□□□□ 0.3
YBX1P67809 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC16.91■□□□□ 0.3
YBX1P67809 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 AC148477.5-201ENST00000625164 1645 ntBASIC16.91■□□□□ 0.3
YBX1P67809 CHGA-202ENST00000334654 1474 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.91■□□□□ 0.3
YBX1P67809 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC16.91■□□□□ 0.3
YBX1P67809 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
YBX1P67809 GYG1-214ENST00000627418 1831 ntTSL 5 BASIC16.91■□□□□ 0.3
YBX1P67809 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.91■□□□□ 0.3
YBX1P67809 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
YBX1P67809 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.9■□□□□ 0.3
YBX1P67809 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 AC103564.2-201ENST00000432853 1299 ntBASIC16.9■□□□□ 0.3
YBX1P67809 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
YBX1P67809 AC079781.3-201ENST00000449110 356 ntBASIC16.9■□□□□ 0.3
YBX1P67809 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC16.9■□□□□ 0.3
YBX1P67809 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC16.9■□□□□ 0.3
YBX1P67809 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 LINC01451-201ENST00000623792 534 ntBASIC16.9■□□□□ 0.3
YBX1P67809 PTPN11-207ENST00000639857 801 ntTSL 5 BASIC16.9■□□□□ 0.3
YBX1P67809 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.9■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms