Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC12.23□□□□□ -0.45
CKS1BP61024 MCCD1P1-208ENST00000445732 328 ntBASIC12.23□□□□□ -0.45
CKS1BP61024 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC12.23□□□□□ -0.45
CKS1BP61024 AC008771.1-201ENST00000508000 1151 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 ALKAL1-202ENST00000523939 536 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC12.23□□□□□ -0.45
CKS1BP61024 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC12.23□□□□□ -0.45
CKS1BP61024 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 AC124016.1-201ENST00000609552 612 ntBASIC12.23□□□□□ -0.45
CKS1BP61024 AL353708.3-201ENST00000610272 989 ntBASIC12.23□□□□□ -0.45
CKS1BP61024 CR392000.1-201ENST00000624770 1228 ntBASIC12.23□□□□□ -0.45
CKS1BP61024 ZMYND15-202ENST00000433935 2411 ntAPPRIS P1 TSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 MAPK4-201ENST00000400384 4770 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 AL137784.3-201ENST00000623858 2288 ntBASIC12.23□□□□□ -0.45
CKS1BP61024 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 STAT5A-211ENST00000590949 3318 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 NTRK3-203ENST00000357724 2980 ntTSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 DAAM2-211ENST00000633794 3871 ntTSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 SYT1-201ENST00000261205 4808 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 SRSF2-203ENST00000392485 2885 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 SORCS2-201ENST00000329016 5582 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 C1orf159-205ENST00000421241 1841 ntAPPRIS P3 TSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 GLUL-202ENST00000331872 4364 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
CKS1BP61024 LINC00511-201ENST00000453722 1716 ntTSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 HECW1-203ENST00000453890 5169 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
CKS1BP61024 OSMR-202ENST00000502536 1740 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
CKS1BP61024 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 BCL11B-201ENST00000345514 7603 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 TTC28-AS1-207ENST00000428584 5859 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 BCL2L11-219ENST00000619294 5132 ntTSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 NEURL1-201ENST00000369780 4314 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 SDHA-204ENST00000504309 2067 ntTSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 LRCH1-202ENST00000389797 3314 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC12.22□□□□□ -0.45
CKS1BP61024 RPS2P4-201ENST00000476944 856 ntBASIC12.22□□□□□ -0.45
CKS1BP61024 AL691442.1-201ENST00000505139 1042 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 AC233263.1-201ENST00000578059 224 ntBASIC12.22□□□□□ -0.45
CKS1BP61024 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 ETV7-202ENST00000340181 1719 ntAPPRIS P3 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 ABCA7-203ENST00000435683 6211 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 R3HDM2P2-201ENST00000401880 2116 ntBASIC12.22□□□□□ -0.45
CKS1BP61024 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC12.22□□□□□ -0.45
CKS1BP61024 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 CLEC16A-203ENST00000409790 6891 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 TMEM38A-201ENST00000187762 2649 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
CKS1BP61024 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
CKS1BP61024 RALGAPA1-201ENST00000307138 7911 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 AGBL3-202ENST00000435976 2495 ntTSL 5 BASIC12.21□□□□□ -0.45
CKS1BP61024 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC12.21□□□□□ -0.45
CKS1BP61024 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC12.21□□□□□ -0.45
CKS1BP61024 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC12.21□□□□□ -0.45
CKS1BP61024 NID2-208ENST00000617139 3827 ntTSL 5 BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 32.6 ms