Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 ZNF385A-212ENST00000551109 2369 ntTSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 RABAC1-201ENST00000222008 821 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 VKORC1-205ENST00000394975 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 AC092647.4-201ENST00000457211 535 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.06■□□□□ 0.32
PKNOX1P55347 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC17.06■□□□□ 0.32
PKNOX1P55347 RABAC1-208ENST00000601078 728 ntTSL 3 BASIC17.06■□□□□ 0.32
PKNOX1P55347 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC17.06■□□□□ 0.32
PKNOX1P55347 AC006011.2-201ENST00000621313 1158 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 WDR6-223ENST00000627177 207 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PKNOX1P55347 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 CDKN1A-204ENST00000448526 2104 ntAPPRIS P1 TSL 3 BASIC17.06■□□□□ 0.32
PKNOX1P55347 Z83836.1-201ENST00000624605 1642 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 AC060834.1-201ENST00000443027 2032 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 AC079328.2-201ENST00000561241 3354 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 FLJ38576-201ENST00000623820 2459 ntBASIC17.06■□□□□ 0.32
PKNOX1P55347 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.06■□□□□ 0.32
PKNOX1P55347 TOM1-204ENST00000411850 2390 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PKNOX1P55347 PEX16-201ENST00000241041 1479 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 MCRS1-202ENST00000357123 1428 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PKNOX1P55347 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PKNOX1P55347 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC17.05■□□□□ 0.32
PKNOX1P55347 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 KCNG3-201ENST00000306078 3824 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC17.05■□□□□ 0.32
PKNOX1P55347 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC17.05■□□□□ 0.32
PKNOX1P55347 KRT18P57-201ENST00000443599 1254 ntBASIC17.05■□□□□ 0.32
PKNOX1P55347 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 RNF126P1-202ENST00000569893 925 ntBASIC17.05■□□□□ 0.32
PKNOX1P55347 PSMD8-202ENST00000585598 541 ntTSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC17.05■□□□□ 0.32
PKNOX1P55347 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 B4GALNT4-201ENST00000329962 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PKNOX1P55347 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 LYRM9-203ENST00000460380 2196 ntTSL 2 BASIC17.05■□□□□ 0.32
PKNOX1P55347 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PKNOX1P55347 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 DOC2GP-204ENST00000639052 2548 ntBASIC17.04■□□□□ 0.32
PKNOX1P55347 MGEA5-202ENST00000361464 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC17.04■□□□□ 0.32
PKNOX1P55347 RPA2-201ENST00000313433 1237 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 MYCLP1-201ENST00000372451 1075 ntBASIC17.04■□□□□ 0.32
PKNOX1P55347 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PKNOX1P55347 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC17.04■□□□□ 0.32
PKNOX1P55347 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.04■□□□□ 0.32
PKNOX1P55347 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms