Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MRPL43-201ENST00000299179 747 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 COX5BP2-201ENST00000392354 334 ntBASIC17.11■□□□□ 0.33
LIMK1P53667 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 TFAMP1-201ENST00000412727 736 ntBASIC17.11■□□□□ 0.33
LIMK1P53667 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.11■□□□□ 0.33
LIMK1P53667 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.11■□□□□ 0.33
LIMK1P53667 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 RN7SL204P-201ENST00000582831 262 ntBASIC17.11■□□□□ 0.33
LIMK1P53667 MED16-214ENST00000617672 554 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.11■□□□□ 0.33
LIMK1P53667 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 TDRP-201ENST00000324079 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMK1P53667 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIMK1P53667 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
LIMK1P53667 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC17.1■□□□□ 0.33
LIMK1P53667 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC17.1■□□□□ 0.33
LIMK1P53667 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC17.1■□□□□ 0.33
LIMK1P53667 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 VMA21-202ENST00000370361 693 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 AL627223.1-201ENST00000416693 442 ntBASIC17.1■□□□□ 0.33
LIMK1P53667 GSAP-205ENST00000430584 600 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 TSPY16P-201ENST00000449843 468 ntBASIC17.1■□□□□ 0.33
LIMK1P53667 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIMK1P53667 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC17.1■□□□□ 0.33
LIMK1P53667 COQ6-210ENST00000554920 649 ntTSL 3 BASIC17.1■□□□□ 0.33
LIMK1P53667 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC17.1■□□□□ 0.33
LIMK1P53667 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 SBDS-205ENST00000617799 953 ntAPPRIS ALT1 TSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 SH2B3-201ENST00000341259 5406 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC17.1■□□□□ 0.33
LIMK1P53667 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
LIMK1P53667 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
LIMK1P53667 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.09■□□□□ 0.33
LIMK1P53667 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 FBXO44-205ENST00000376768 959 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 GATB-205ENST00000508611 605 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC17.09■□□□□ 0.33
LIMK1P53667 CR383656.12-201ENST00000549567 513 ntBASIC17.09■□□□□ 0.33
LIMK1P53667 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC17.09■□□□□ 0.33
LIMK1P53667 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC17.09■□□□□ 0.33
LIMK1P53667 AL359881.2-201ENST00000602973 570 ntBASIC17.09■□□□□ 0.33
LIMK1P53667 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 SLC38A11-202ENST00000409058 1647 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
LIMK1P53667 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
LIMK1P53667 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
LIMK1P53667 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.09■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms