Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC16.61■□□□□ 0.25
MSX2P35548 NOL3-201ENST00000268605 1394 ntAPPRIS P3 TSL 3 BASIC16.61■□□□□ 0.25
MSX2P35548 NOL3-211ENST00000568146 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
MSX2P35548 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 SDF4-201ENST00000263741 2079 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 IL34-201ENST00000288098 1607 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 BIRC7-203ENST00000395306 593 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.6■□□□□ 0.25
MSX2P35548 PENK-204ENST00000518770 863 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 REXO2-216ENST00000544196 452 ntTSL 3 BASIC16.6■□□□□ 0.25
MSX2P35548 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC16.6■□□□□ 0.25
MSX2P35548 AC008687.5-201ENST00000593746 558 ntBASIC16.6■□□□□ 0.25
MSX2P35548 AC113410.3-201ENST00000623366 203 ntBASIC16.6■□□□□ 0.25
MSX2P35548 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 BTNL9-201ENST00000327705 3500 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 AC103702.1-201ENST00000548801 2630 ntBASIC16.6■□□□□ 0.25
MSX2P35548 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
MSX2P35548 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
MSX2P35548 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 AC073324.2-201ENST00000626532 2941 ntTSL 4 BASIC16.59■□□□□ 0.25
MSX2P35548 CEP120-201ENST00000306467 4900 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 MAGEA4-206ENST00000393921 1727 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC16.59■□□□□ 0.25
MSX2P35548 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC16.59■□□□□ 0.25
MSX2P35548 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC16.59■□□□□ 0.25
MSX2P35548 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC16.59■□□□□ 0.25
MSX2P35548 ART1-201ENST00000250693 1312 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 CD209-210ENST00000601951 1439 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 TPSD1-201ENST00000211076 1499 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 BX276092.7-203ENST00000637198 1536 ntBASIC16.59■□□□□ 0.25
MSX2P35548 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 KIF25-203ENST00000443060 1613 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC16.59■□□□□ 0.25
MSX2P35548 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.59■□□□□ 0.25
MSX2P35548 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
MSX2P35548 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC16.58■□□□□ 0.25
MSX2P35548 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC16.58■□□□□ 0.25
MSX2P35548 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC16.58■□□□□ 0.25
MSX2P35548 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms